Pairwise Alignments

Query, 659 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 955 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  348 bits (893), Expect = e-100
 Identities = 195/363 (53%), Positives = 255/363 (70%), Gaps = 18/363 (4%)

Query: 303 VNEVKRVMTALSSGDLSAQLTHPFEGEFAELGEVISQFIVTLRQIITDINSVAATIKLAA 362
           +++V R++ A+S GDL++++   + G F +L    +  +  L++I+  I      I  AA
Sbjct: 605 LDDVARMLNAMSQGDLTSRIEADYAGTFGQLKNDANSTVEQLKEIVERIKGATEAINTAA 664

Query: 363 TEISNGNTDLSSRTEQQASNLEQTASSMEELNSTVRQNSDNAMQANILAGKATEIAASGG 422
            EI++GNTDLSSRTE+QAS+LE+TASSME+L STV+QN+DNA  AN LA  A ++A  GG
Sbjct: 665 QEIASGNTDLSSRTEEQASSLEETASSMEQLTSTVKQNADNARTANELASGAQQVAVKGG 724

Query: 423 ELIEQVVVTMASINESAQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFSVVAS 482
           E++EQVV TM +I+ S+ KIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF+VVA+
Sbjct: 725 EVVEQVVQTMGAIHHSSSKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAT 784

Query: 483 EVRSLAQRSANAAKDIKALISDSVSKISNGNELVDRSGSTMKDIVVSIKRVHDLMADIAS 542
           EVR+LAQRSA AAK+IKALISDSV K+ NG+ LVD +G TM+++V SIKRV  +MADIA 
Sbjct: 785 EVRNLAQRSAAAAKEIKALISDSVEKVENGSRLVDSAGRTMEEVVTSIKRVAKIMADIAE 844

Query: 543 ASAEQATGINEVNQAVNQMDEMTQQNAALVEEAAAASESLLAQAEQLYDHVAMFRLPDQD 602
           AS EQ+ GI +V  AV+QMDE+TQQNAALVEEAAAA+ESL  QA  L + V++FRL  + 
Sbjct: 845 ASREQSAGIEQVGLAVSQMDEVTQQNAALVEEAAAAAESLEEQAHGLMEAVSVFRLGHEA 904

Query: 603 TS------APSLLKAVNKRPQSAPVTRHPASHIAKTPAKITAKASSRAQPVMQVAHDEEW 656
            +      +P++ +A    P      R P+      P  + A              D+EW
Sbjct: 905 PAGRHAGPSPAMGQAQAAIPHLQQEVRVPSPKFGGKPVNLPASL------------DDEW 952

Query: 657 ESF 659
           E F
Sbjct: 953 EEF 955



 Score = 42.0 bits (97), Expect = 1e-07
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 194 TQAVIEFTLDGTILTANQNFLQTVGYQLDEIQGRHHSMFVDEQYKQSQEYQHFWQRLRSG 253
           T  V +  L G I   N++F++  G+   E+ G  H++ V      S+ Y   W  L++G
Sbjct: 18  TLIVSKTDLKGQITYINRDFIEISGFTEAELIGEPHNI-VRHPDMPSEAYADMWTHLKAG 76

Query: 254 EFFVDEYKRFGKGGKEIWIQASYNPIMDSE 283
             +    K   K G   W++A+  PI +++
Sbjct: 77  RPWTGLVKNRCKNGDHYWVEANATPIREND 106