Pairwise Alignments

Query, 1045 a.a., conserved hypothetical protein from Pseudomonas syringae pv. syringae B728a

Subject, 1023 a.a., penicillin-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 1187 bits (3072), Expect = 0.0
 Identities = 605/1005 (60%), Positives = 754/1005 (75%), Gaps = 4/1005 (0%)

Query: 29   RTPKYPRRKRYGWRVFWVV-VVLAGVALGVAVAVESRTSRLQAREFSRFAASLGYSMQPG 87
            R  K  RR +     +W++ V+L G A G A+  E  TS LQ+RE SR+AA L Y ++PG
Sbjct: 9    RVLKKRRRAQKNKPRYWLIAVLLIGTAGGAALFHEMETSTLQSREISRYAAGLTYQVEPG 68

Query: 88   PSHDVVYPGDGPFDRRLGYSSMDEFLSRLLKRDYVITRQTRFSPELLRYVRHGFFVPYEE 147
             S  + +P  GPFD+RLGY ++     RLL+R + I +Q RFS EL RY ++G +VPY E
Sbjct: 69   ASDKIAFPSYGPFDQRLGYVALPNIQERLLQRGFTIRQQVRFSDELQRYAQYGLYVPYTE 128

Query: 148  KTQAGLSITDCRNEPLYEFRYPQQFYPTFAAIPPMLVNSLLFIENRDLLDPQQPMANPAV 207
            K QAGL++ DCR EP+Y+FRYP   Y  F AIP ++V SLLFIENRDLL  + P+ NPAV
Sbjct: 129  KVQAGLTLFDCRTEPVYQFRYPGNHYADFNAIPDLIVQSLLFIENRDLLSDKNPLVNPAV 188

Query: 208  DWPRFVKAAWSQLAKMFALPGQSAGGSTLATQLEKYRHSPDGLTLSGSEKLRQMISASVR 267
            DWPRF KAA +Q+ K   L GQSAGGSTLATQ+EKYRHS DGLT S  EK+RQM+SASVR
Sbjct: 189  DWPRFFKAALTQVGKALDLDGQSAGGSTLATQVEKYRHSEDGLTYSPQEKIRQMVSASVR 248

Query: 268  AYQPGTETLAVRQRVVRDYLNSVPLSAVPGHGEVHGLAEGLRVWFGADFGKTNEILASNP 327
            AY+ G  TL  R+ VV  YLNSVPLSA PG+GEVHGL +GL VWF AD  + N++L +  
Sbjct: 249  AYRLGANTLEARKLVVWAYLNSVPLSAAPGYGEVHGLGDGLWVWFAADPERVNQLLDTRL 308

Query: 328  GNKQALADKALALREVLSLVIAQRRPSHYLA-KGRQELAELTDSHIRLLAQANVIDRPLA 386
                 LA++ LALR+V++L+IA RRPS+YLA  GR +L  LTDSHIRL  +  +I + L 
Sbjct: 309  NQSVNLAEQGLALRQVVALMIAHRRPSYYLAVSGRPDLNALTDSHIRLFYREKMISKSLM 368

Query: 387  EAALAAHVTYRDWAQQPTLQPIETNKGISVARTRLSNLLNRPLYDLDRLDLSATSTLHGE 446
            +AAL A + +RD+ +QP +  I TNKG+  ART LS  L   LYDLDR+DLSA++TL+ E
Sbjct: 369  DAALNATLQFRDFVRQPAVTRINTNKGLLAARTHLSRQLGVSLYDLDRMDLSASTTLNFE 428

Query: 447  LQRSVSQYLRDLANPEFAAKTGLMGERLLTPASTTQVRYSFTLFERGVDGSRVRVQTDST 506
            LQ  V++YL+ LANPE+AA+ G++G RLL    T  VRYSFTLFER  +G +VRVQTD+T
Sbjct: 429  LQSEVTRYLQKLANPEYAAQVGILGFRLLAAEKTADVRYSFTLFERTDEGFKVRVQTDNT 488

Query: 507  DQPFDINEGSKLELGSTAKMRVLTTYLEIIAELHGRYSGLSPAQLRKVPVEEPDRLTRWA 566
            +QPFD+NEGSKLELGSTAK+RVLTTYLEIIA+LH +Y  LS  +LR+  VE  D L+ W+
Sbjct: 489  NQPFDLNEGSKLELGSTAKLRVLTTYLEIIAKLHSKYHDLSVMELRRHLVEAQDTLSVWS 548

Query: 567  VDYLLLNKDRDLAKMLSAALDRTYSASPAEAFFTGGGMHRFNNFRREDNERIPTLRESLR 626
            +++LL +  RDLA ML AAL+R YSA P E FFTGGG+H FNNFR+ED+ERI T+R++LR
Sbjct: 549  LEWLLTSPKRDLATMLEAALEREYSADPKERFFTGGGIHTFNNFRKEDDERIVTMRDALR 608

Query: 627  ESINLPFIRLMRDVVRYSTYQAPNNSAELLKDDDNPRRQEYLAQFADREGTVFLLRFWKR 686
            ESINLPF+RLM+D+ RY+ Y +    A+L+KDD +PRR EYL QFAD+EG  +LLRFW++
Sbjct: 609  ESINLPFVRLMKDIERYTLY-SEGYRAQLMKDDKDPRRMEYLRQFADKEGRAYLLRFWRK 667

Query: 687  YKEKTTQERLDTFLDGIHPTAIRLAAVHRYLLPGADQGTFNAFIRAHLDEPRASSRLTDK 746
            YK+KTT ER+ T L+G+ P+A RLAAVHRYLLP A    F  F+   L  P    +LTDK
Sbjct: 668  YKDKTTDERMATLLEGLKPSADRLAAVHRYLLPEASVSEFVRFMDDKLP-PITRDKLTDK 726

Query: 747  RLADLYQSYGPGTYDLPDQGYIARVHPLELWLVGYLLKHPEAQFKDAVAASRYERQEVYG 806
            +L  LY  YG G Y LPDQGYIARVHPLELWL+GYL +H +A F D VAAS  +RQEVY 
Sbjct: 727  QLEKLYNKYGRGKYSLPDQGYIARVHPLELWLLGYLNEHHQASFSDVVAASSDKRQEVYS 786

Query: 807  WLFKSRHKGARDSRVRTMMEVEAFLDIEQRWQRVGYPFDHLVPSLATAIGSSGDRPAALA 866
            WLFK+RH+ ARDSRVRTM+EVEAF DI Q WQR+GYPFDHLVPSLATA+GSSGDRPAAL+
Sbjct: 787  WLFKTRHRNARDSRVRTMLEVEAFTDIHQSWQRLGYPFDHLVPSLATALGSSGDRPAALS 846

Query: 867  ELIGIIQNDGIRLPAVRIDSLHFAADTPYDTQLSINPELGKRVLPSEVAAAMREALSQVV 926
            EL+GII NDG+R+P  RI+ LHFA DTP++T+ +     G RVLP EVA A+R ALSQVV
Sbjct: 847  ELMGIILNDGVRVPTKRINHLHFAQDTPFETEFTPVETQGVRVLPVEVARALRGALSQVV 906

Query: 927  DGGTAKRVQGTFKMQDGSVLAMGGKTGTGDNRIESVGAGGRILSSRAINRTATFVFYIGD 986
            D GTA+R+ G FK+ DG+ + +GGKTGTGDNR+++V   G ++ S A NRTATFVFY+GD
Sbjct: 907  DSGTARRISGVFKLPDGTPIVLGGKTGTGDNRLQTVNRAGTVVQSLARNRTATFVFYLGD 966

Query: 987  NHFGALTAFVPGRAAEGFRFTSALPVQVLKGMAPILTPYLENHGQ 1031
             HFG LTA+V G  +E F FTSALPVQVLKGMAPIL+PYL  + Q
Sbjct: 967  RHFGTLTAYVAGSDSEKFTFTSALPVQVLKGMAPILSPYLAPNEQ 1011