Pairwise Alignments

Query, 278 a.a., RNA binding S1 from Pseudomonas syringae pv. syringae B728a

Subject, 278 a.a., GntR family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

 Score =  508 bits (1309), Expect = e-149
 Identities = 249/277 (89%), Positives = 263/277 (94%)

Query: 1   MALIGRYNSLQIVKHTNFGLYLDGAQDGEILLPNRYIPKDVPTEDEDWLNVFIYLDSEDK 60
           MAL+GRYNSLQ+VKHTNFGLYLDG  DGEILLPNRYIPKD+P+EDEDWLNVFIYLDS+DK
Sbjct: 1   MALVGRYNSLQVVKHTNFGLYLDGGADGEILLPNRYIPKDIPSEDEDWLNVFIYLDSDDK 60

Query: 61  LLATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRTLQAGDYCVVHVY 120
           L+ATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKR + AG+YCVVHVY
Sbjct: 61  LIATTEKPKVQVGEFASLKVVEVNSIGVFLDWGLPKDLLLPYSEEKRQMTAGEYCVVHVY 120

Query: 121 LDKHTRRITATARLDRYLDKTPANYSVGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEV 180
           LDKHTRRITATARLDRYLDKTPANY+ GQEVDLLVAEATDMGFKAIINNKHWGLIHKNE+
Sbjct: 121 LDKHTRRITATARLDRYLDKTPANYTPGQEVDLLVAEATDMGFKAIINNKHWGLIHKNEI 180

Query: 181 FKFMRAGKQEKGYIKEIRSDGNISLSLQPVGAEAASSLNSKILTKLRENNGTLPVSDKSD 240
           FKFMRAG QEKG+IKEIR DG ISLSLQPVG EAA+SLN+KIL KLRENNGTL VSDKSD
Sbjct: 181 FKFMRAGMQEKGFIKEIRPDGKISLSLQPVGQEAATSLNAKILAKLRENNGTLAVSDKSD 240

Query: 241 PQVISGLFGVSKGNFKKAIGALYKQGQIVIHADRIEL 277
           P +IS LFGVSKGNFKKAIGALYK GQIVIHADRIEL
Sbjct: 241 PALISSLFGVSKGNFKKAIGALYKNGQIVIHADRIEL 277