Pairwise Alignments

Query, 1214 a.a., exonuclease SbcC from Pseudomonas syringae pv. syringae B728a

Subject, 1020 a.a., exonuclease SbcC, putative (RefSeq) from Shewanella amazonensis SB2B

 Score =  185 bits (470), Expect = 1e-50
 Identities = 317/1236 (25%), Positives = 480/1236 (38%), Gaps = 254/1236 (20%)

Query: 1    MKILAIRLKNLASLAGPFEIDFTAEPLASAGLFAITGPTGAGKSTLLDALCLALFGAIPR 60
            MK L + +           +DF A  L    LF I GPTGAGK+T+LDA+C AL+G    
Sbjct: 1    MKPLTLAITAFGPFVDTQTLDFRA--LGEWPLFLINGPTGAGKTTILDAICFALYGKTTG 58

Query: 61   LSNIG-QSKVPDIDGDITTSDPRTLLRRGTGSGYAEVDF-IGIDQRRYRARW--ETNRAR 116
                G Q +      D+ T                EV F  G+  + YR +   E  RA+
Sbjct: 59   NEREGTQMRCDAAPDDVLT----------------EVTFEFGLGDKVYRVKRMPEQQRAK 102

Query: 117  DNATK-KLQASRQTLTDLDSEQI--LSNQSKREFEQLIENRLGLNFEQFTRAVMLAQSEF 173
             +     +Q S   L  ++ E    L+     E    IE+ LGL  EQF + ++L Q +F
Sbjct: 103  KSGEGFTVQKSDALLERIEGEHTTPLAAGKVTEVTAQIEDLLGLEVEQFRQVMVLPQGQF 162

Query: 174  SAFLKADDKERSELLEKLTNTAIYSQLGRRAYSKSKEAEDALKTLTAQASNIIPLAPELL 233
               L AD KER  +  +L  T IY ++      K+ E +   K L A+ + I+  A    
Sbjct: 163  RKLLLADSKEREAIFGQLFQTGIYKRIEDSLKQKALELKARAKELEARRAGILETAG--- 219

Query: 234  AELEQRLSDAQQQLKAHQTQQRQLEIKQQWLTELHRLRDEQLAAQEALNSAQQAWDEHSG 293
            AE  + L+DA   L                  EL      + AA+  L +A+    +   
Sbjct: 220  AESVEALNDAISAL----------------APELASATKAKQAAEAKLTAAKA---QREA 260

Query: 294  ARQTLGQLERLGPQRHRFARRVTLNAQLDPLAEQIRQHQRQ--QTSLHDQQQQLESRRTQ 351
            A   L +   L   R R       NA+ + +A    Q +R     SL    Q  E R  +
Sbjct: 261  AEAKLREFSALNDTRLRLEAE---NAKAESMAALGMQLERAALAESLAGTWQAWEERAKE 317

Query: 352  AQTSLLEAQQAHSSAKPLLLQAFEAQNTLNHLAQELAKASDLHQQSEQLCIQGKTSLQTL 411
             +++   A  A  +AK   L    A+     L +  A+   L  ++E+L           
Sbjct: 318  RKSAEAAAVMAAEAAKQAELSYANAKTAAAALPELEARRHQLKNEAERLA---------- 367

Query: 412  LDQQQQVAQRLERIAGQLQHSSELAPLAQAWNAWRDRLKSLTLIANRLKHGHSELPALQQ 471
                 +   R+ R++     +  +  L Q  NA         L AN L H  S L   Q 
Sbjct: 368  -----EWRPRMHRLSAL---NEAITGLGQTLNA---------LDAN-LAHVRSRLGDTQG 409

Query: 472  RAKTADQQLTEQRSALELLYREADCEVEAVTEQVQILGSLLQDNRKQQRAFEELARLWAS 531
            R       LT+QR  L  L   A              GSL     +Q   FE        
Sbjct: 410  RI----AMLTQQRRDLSALASTA--------------GSLEATLVQQTHVFER------- 444

Query: 532  QQDVDRQLADLSQQQQSAQQQREQLNSEGLRVRDELTVAEQTLTVTRQLLERQRLARSAS 591
                 +QL +  +Q Q    +  +L ++G + +      +  LT  R+LLE       A+
Sbjct: 445  ----HQQLIEKERQAQKLATELSRLEADGRQAK----ANQDNLTRARELLELAWHQGQAA 496

Query: 592  VEELRVQLQDDQPCPVCGSIEH--PWHQPEALLESLTQHDDNEQASAQKAVDLLTEQRNQ 649
            +  L  +L    PCPVCGS+EH  P H   AL        D+E A+A++A         Q
Sbjct: 497  M--LAARLLPGAPCPVCGSVEHPSPAHHEGAL------PGDDELAAAREA-------EQQ 541

Query: 650  LREQVGGVIARQKELLRQHEQLTVRHQALAPDLESHPLAAQLLDRDADKRDGWLSQQLSQ 709
             RE +      + E   Q ++L V  Q LA D      AA L D  A   +      L Q
Sbjct: 542  AREMLS---RARSEYKAQKQRLEVMQQELAND------AAALGDALATSLE-QKQYALGQ 591

Query: 710  LSEVISRDEQRQQALLTLQKDAARL---QQQLQAATEASQTAAGHVAEQLKQLEADGQRL 766
              E     +  QQ+L  L+ +  +L   Q+QL A  +  Q      + +L++   + + L
Sbjct: 592  RREACQNAKAAQQSLQALEHELEQLDNTQKQLLADIDGLQRQRDQHSGELQKACGEQESL 651

Query: 767  EEELTAFTPLVSPQVLEGLRSDASATVLQLEQQVTQRLDQLEQQHEEQQEQTER-QQKIE 825
               +        P++ + L +         EQ     L  L Q  E    Q E+ Q ++ 
Sbjct: 652  AGAM--------PELCQRLGN---------EQAFDAHLAALSQDIEALSGQMEKLQTQLS 694

Query: 826  KQQVEQQTRLHRQTELAQELTRLGEQQQTSQQTLAGLLGDHASAEQWQQALEQTIDQARQ 885
              Q+ Q              T+  E++   QQTL+      A+A            +AR 
Sbjct: 695  DAQIRQ--------------TQCNERRAALQQTLSEARSREAAA------------KARF 728

Query: 886  AESLAAQALQDI--HNQLIQLAAELKSGQQQQQSLQQELAELDVQISEWRAQHPQLDD-- 941
               LAA+   D+   NQ    A ++   + +  + QQ+LA L  +++   AQ   L D  
Sbjct: 729  DTELAAKGFNDVVSFNQARMTADDMGDAKSRIATWQQQLAGLKERMA---AQQESLGDVL 785

Query: 942  -------SALDTLLTYDDAHVEQLRVQLNSTDKALEQAKVLL---QERDQRLQQHQAQHS 991
                   +AL+T          Q    LN T     +A+  L    E   RL +  A   
Sbjct: 786  PPDLTELAALETAAQDGFNQCNQQWQVLNDTQVMYSRARAQLGTEAEVAARLDEEYAVVG 845

Query: 992  DLTDSAQLATALQQALEQSALSEQHCADLRAELSEDQRRRNANSELQARIADANSEYLRW 1051
             L+D+A   T  + +L++  L      D+  E SE   R +       R  D        
Sbjct: 846  TLSDAASGMTGARISLQRFVLGVL-LDDVLIEASERLHRMSKGRYRLLRRED-------- 896

Query: 1052 ARLASLIGSAEGDRFRKIAQAYNLDLLVHHA-NAQLRQLVRRYRLKRGGSMLGLLVMDTE 1110
                     A+G+R      A  LDL V  A   +LR +     L  G S +  L +   
Sbjct: 897  --------KAKGNR------ASGLDLEVEDAYTGKLRPVA---TLSGGESFMAALSLALG 939

Query: 1111 MGDELRSVHSLSGGETFLVSLALALGLASMASSTLRIESLFIDEGFGSLDPESLQLAMDA 1170
            + D    V + +GG                    +++++LFIDEGFGSLD +SL+LA+  
Sbjct: 940  LSD---VVQAYAGG--------------------IKLDTLFIDEGFGSLDQDSLELAVRT 976

Query: 1171 LDGLQAQGRKVGVISHVQEMHERIPVQIKVRRQGNG 1206
            L  LQ+ GR +GVISHV EM E+I  ++ + +   G
Sbjct: 977  LVDLQSSGRMIGVISHVTEMKEQIQTRVDIHKDTVG 1012