Pairwise Alignments

Query, 695 a.a., Type III secretion protein HrcV from Pseudomonas syringae pv. syringae B728a

Subject, 681 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  412 bits (1059), Expect = e-119
 Identities = 256/685 (37%), Positives = 401/685 (58%), Gaps = 35/685 (5%)

Query: 18  RSELVGAFFVIAIVFMMITPLPTGLIDVLIAVNICISCLLIMLAMHLPRPLAFSTFPAVL 77
           R ++V A  ++  + MM+ PLPT ++D+LI +N+  S +L+++A++L  PL  S FP++L
Sbjct: 21  RQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLL 80

Query: 78  LLTTMFRLALSVSTTRLILLNQDAGHIVEAFGQFVVGGNLAVGLVIFLILTVVNFLVITK 137
           L+TT++RL+L++ST+RL+LL  +AG+IV+AFG+FVVGGNL VGLV+F I+T+V F+VITK
Sbjct: 81  LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITK 140

Query: 138 GSERVAEVGARFTLDAMPGKQMSIDSDLRANLITVHEARKRRAELNKESQLFGAMDGAMK 197
           G ERVAEV ARF+LD MPGKQMSID DLRA +I    AR  R  + +ES+  GAMDGAMK
Sbjct: 141 GIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMK 200

Query: 198 FVNGDAIASLIIVAINMIGGISIGVLQHNMAAGDALQLYTVLTIGDGLIAQIPALLISVT 257
           FV GD IA +I+V +N+IGGI I ++Q++M+  +A+  Y+VL+IGDGL  QIP+LLIS++
Sbjct: 201 FVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLS 260

Query: 258 SGMIITRVPNTEAGVEANIGREIAEQITSQPKAWIIASVAMLGFAALPGMPTGVFITIAI 317
           +G+I+TRVP  +     N+  E++ QI  QP++ I+ +V ++  A +PG P   FIT+A 
Sbjct: 261 AGIIVTRVPGEK---RQNLATELSSQIARQPQSLILTAVVLMLLALIPGFP---FITLAF 314

Query: 318 ICGAGGLLQLQRAKPKADEQRTATVAPEMNGKEDLRTFSPSRQFVLQFHPGQDSAQIEAL 377
                 L  +   + K+        APE +          +   +L+  P   SA    L
Sbjct: 315 FSALLALPIILIRRKKSVVSANGVEAPEKDS-----MVPGACPLILRLSPTLHSAD---L 366

Query: 378 VSEIRKRRNRLVVQYGLTLPSFIIEHVDDIAPDEFRFTVYDVPMLKATFTQSHVAVEARQ 437
           + +I   R  L    G+ LP   IE + +   ++    +Y  P+    F+ S  A     
Sbjct: 367 IRDIDAMRWFLFEDTGVPLPEVNIEVLPE-PTEKLTVLLYQEPV----FSLSIPAQADYL 421

Query: 438 LEGENLPAAIPGNTDRQED---QWVWLPAEQSGELNPVSSTTLIIERMERALQSCA---- 490
           L G +  A++ G++    +   Q  WL  + + +            +   AL  C     
Sbjct: 422 LIGAD--ASVVGDSQTLPNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVLLRH 479

Query: 491 -PQFIGLQETKAILGWLESEQPELAQEMQRVLTLTRFSAVLQRLASECVPLRAIRVIAET 549
             +FIG+QET+ ++  +E    EL +E+QR L + + +  LQRL SE V +R +R+I  T
Sbjct: 480 MGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLIFGT 539

Query: 550 LIEHCQHERDTNVLTDYVRIALKSQIYHQYCGAEG--LQVWLLTPESEGLLRDGLRQTQT 607
           LI+    E+D  +LT+YVRIAL+  I  +    EG  L +  +    E L+R+ +RQT  
Sbjct: 540 LIDWAPREKDVLMLTEYVRIALRRHILRR-LNPEGKPLPILRIGEGIENLVRESIRQTAM 598

Query: 608 ETFFALSNEISQMLVQQLHIAFPVRAPEQAVLLVAQDLRSPLRTLLREEFYHVPVLSFAE 667
            T+ ALS+     ++Q +  A  ++   +  ++ + D R  LR +     + VP+LS+ E
Sbjct: 599 GTYTALSSRHKTQILQLIEQA--LKQSAKLFIVTSVDTRRFLRKITEATLFDVPILSWQE 656

Query: 668 ISNAAKVKVMGRFDLEDDLEALDNE 692
           +   + ++V+   DL ++ E  DNE
Sbjct: 657 LGEESLIQVVESIDLSEE-ELADNE 680