Pairwise Alignments

Query, 551 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

Subject, 578 a.a., Methyl-accepting chemotaxis sensor/transducer protein from Variovorax sp. SCN45

 Score =  288 bits (737), Expect = 4e-82
 Identities = 189/554 (34%), Positives = 304/554 (54%), Gaps = 24/554 (4%)

Query: 1   MKWFYDLKISTKLITSFLVVLALTAAMGVFAIIQLGQVNQAAQDIKENWMPSMRAAAGMR 60
           M+   +L+I T+L   F  VL + A      +  +G V    + I  +    + A   M 
Sbjct: 1   MRSLLNLRIGTRLGADFAAVLLMLAGAIGLGLHAMGNVQSRLEGIVNSNNVKVAAVNTMS 60

Query: 61  FFAANYRLKENRHI--AADTAQEKAQMELEAADSRKQFETRLAIYDKLISSDDDRQLFNS 118
                  + +   I    DTA  +   ++  A  R+++     + +KL+++ + + L   
Sbjct: 61  DAIREIAILDGNLILLTEDTAMREESKKIVGA--RERYAEAHKVLEKLVTTPEGKALLAR 118

Query: 119 VSASWAAYLKVSNDLFDQSRQNLEAQARALLKGESKTHFDEVTTQLQKMVELNEAGATIA 178
                A  L ++  L + + QN   +A  +   + +     V T+L  M       +  A
Sbjct: 119 ADEKAALLLPLNAQLSELALQNKNDEATQIFIAKFQPAVRNVLTELDAMDANENKLSQAA 178

Query: 179 GNKGTSLYETSRISIIVVLIAALLIGLGLALFIARIISRPLKEAATAAEQLAEGNLNAHI 238
             +    Y  SR  +  +   A+L G  +A F    I+RP+ EA   AE++A G++ + I
Sbjct: 179 SREAAEGYAWSRNLMFALGGFAILFGAAIAWFTTHSITRPIGEAVEVAEKVAAGDITSRI 238

Query: 239 GHGSRDETGMVLNAMRNMVGKLSHIIGEVRNAADNLASASEEVSATAQSMSQATSEQAAS 298
              S+DETG ++ A++ M   L  I+ EVR   D +A+AS ++++  Q +S  T EQA+S
Sbjct: 239 EVRSKDETGRLMTALKAMNESLVRIVREVRMGTDTIATASSQIASGNQDLSSRTEEQASS 298

Query: 299 VEETSASVEQMSASINQNTENAKVTDGMASKAAKEATDGGESVQQTVVAM-------KKI 351
           +E+T+AS+EQ+++++ QN +NA+  + +A  A++ A  GG+ V Q V  M       KKI
Sbjct: 299 LEQTAASMEQLTSTVKQNADNARQANQLAVSASEVAVKGGDVVSQVVGTMGSIDASSKKI 358

Query: 352 AQRISIIDDIAYQTNLLALNAAIEAARAGEHGKGFAVVAAEVRKLAERSQVAAQEIGELS 411
              I +ID IA+QTN+LALNAA+EAARAGE G+GFAVVA+EVR LA+RS  AA+EI  L 
Sbjct: 359 VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLI 418

Query: 412 SSSVDMAE-------KAGKLLDEMVPSINKTSDLVQEISAASEEQAAGVAQINTAMTQLN 464
             SV+  E       +AG+ ++++V S+ + +D++ EI+AAS+EQ +G+ QIN A+TQ++
Sbjct: 419 GDSVEKVEEGSKQVAEAGRTMEQIVGSVKRVTDIMGEITAASQEQTSGIEQINQAITQMD 478

Query: 465 QVTQQNASSSEELAATAEEMSSQAEQLQQAMSFFTLDASPRAVAQSATVDSRNSPNRQP- 523
           QVTQQNA+  EE +A A+ +  QA  L Q +S F +DA+  AVA      +R +P  +P 
Sbjct: 479 QVTQQNAALVEEASAAAQSLQEQASSLVQTVSIFKIDAN--AVATVRPGFTRITPIPRPV 536

Query: 524 ---PRPPQQAPRKA 534
               RP  + P KA
Sbjct: 537 AKTVRPVAKQPAKA 550