Pairwise Alignments

Query, 697 a.a., DNA helicase/exodeoxyribonuclease V, alpha subunit from Pseudomonas syringae pv. syringae B728a

Subject, 712 a.a., exodeoxyribonuclease V, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  371 bits (952), Expect = e-107
 Identities = 271/714 (37%), Positives = 363/714 (50%), Gaps = 98/714 (13%)

Query: 33  LLERWVERGWLRALDKAFVAFLSDLDPQ--ADPLVLVAAALTSHQLGHGHVCLDLYETLK 90
           LL+ W +   + ALD+ F   ++ L P    +PL ++  AL S QL   H CL L   + 
Sbjct: 26  LLKYWEKERLITALDRHFALEMARLHPNDAQEPLFMLLCALLSQQLSAQHTCLVLEYIVP 85

Query: 91  EPDFALSLPPEGDQQSAPMLLPSQLLAALDGAAWCQALAASMLVAEVGDLSAEARQKPLV 150
               A     E   +    L  ++L+ AL                    + A    KPL+
Sbjct: 86  TNPMA-----EPINRCQIRLSLTELIDALQ---------------HFDAIGAPNSNKPLI 125

Query: 151 LAERRLYLRRYWTYERRIAAALR------------QRLAQRETPPEGLPQRLDALFGPAD 198
             + RLYL RY  +E ++A+AL             Q LA        L ++LD LF  A 
Sbjct: 126 FEDGRLYLERYHHFETQVASALTRLSAAALSLTPSQPLASDNQSLLQLRRQLDCLFPSAA 185

Query: 199 SSPQAVIDWQKLACALATRKGFSIITGGPGTGKTTTVVRLLALLQAPAVQSGQPLRIRLA 258
            + +A IDWQK+A A A     ++ITGGPGTGKTTTV +LL L Q      G P +IRL 
Sbjct: 186 HTVEANIDWQKVATATALGNKLAVITGGPGTGKTTTVTKLLLLQQL-----GTPKQIRLV 240

Query: 259 APTGKAAARLTESIS---------------QQVQSLDVSDDVRQKIPSEVTTVHRLLGSR 303
           APTGKAAARL+ESI                +  Q   V      +IP E +T+HRLLG  
Sbjct: 241 APTGKAAARLSESIKASKARLEQELQQASKENPQENQVLLTALSRIPEEASTLHRLLGVI 300

Query: 304 PGTRHFRHHAGNLLPLDVLVVDEASMIDLEMMANLLYALPAHARMVLLGDKDQLASVEAG 363
           P + HFRHH GN L LD+L+VDEASM+DL MM  LL ALP HA ++LLGD+DQLASVEAG
Sbjct: 301 PNSAHFRHHQGNPLRLDLLIVDEASMVDLPMMYKLLSALPEHAGLILLGDQDQLASVEAG 360

Query: 364 AVLGDLCRDAEEGF---------YSPDTQAWLEAVSGEDLGKGGLRQGDAQQHPLAQQVV 414
           AVL D+C   ++           YS      L A++G +L           +  +   + 
Sbjct: 361 AVLADICAGLKQASTQHTEWKMRYSQAQAEQLTALTGFNLS-----HFIHSEPKIGDSLC 415

Query: 415 MLRHSRRFGQGSGIGQLARLVNQQQDQQARALLSAG-----------SHDDLFALALKGE 463
           ML HS RF   +GIG LA  VN+       ++  +G            H    A   +  
Sbjct: 416 MLTHSHRFKGDAGIGLLASAVNRADLAGILSVWQSGLAELTWLEHSVDHSQTQAKISEPS 475

Query: 464 QDLKFERLVLDGLGRGEQGPQGYRHYLNVLAAERPADDSALDDACWTRWARSVLSAFDAF 523
            +   + L+        Q  + Y  YL +L           +  C    A   ++ F+ +
Sbjct: 476 NNTGLKALL-------AQACEQYGDYLRLLQPTHATPIHTSEPFC-PPSAMEAIAKFNQY 527

Query: 524 QLLCAVRKGPWGVEGLNQRITHALFSAKLIESEQQWYEGRPVLMTHNDYGLGLMNGDIGI 583
           ++LCA+R G +GVEG+N  +T AL  AKLI+ +Q++Y GRP+++  NDY LGL NGDIG+
Sbjct: 528 RILCAMRTGDYGVEGINLAVTKALAQAKLIQPQQEFYLGRPIIIQSNDYNLGLFNGDIGL 587

Query: 584 TLRLPERDGEGKQVLRVAFPRNDGSEGVRFVLPSRLNEVETVYAMTVHKSQGSEFAHTAL 643
            L    +D E    L   F + DG   +  VLP+RL   ET YAMTVHKSQGSEF   AL
Sbjct: 588 IL----QDEERADRLMAHFIKADGK--LLKVLPARLPSHETCYAMTVHKSQGSEFNRVAL 641

Query: 644 ILPEALNPV----LTKELIYTGITRAKHWFSLIEPRQGIFEEALRRKVKRLSGL 693
           +LP A + V    LTKELIYT ITRAK  FS +  +Q +FE A  +  +R SGL
Sbjct: 642 VLPPAPSLVQWQLLTKELIYTAITRAKQHFSCLGTQQ-VFERASLQATQRASGL 694