Pairwise Alignments

Query, 697 a.a., DNA helicase/exodeoxyribonuclease V, alpha subunit from Pseudomonas syringae pv. syringae B728a

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain (NCBI) from Escherichia coli BW25113

 Score =  421 bits (1081), Expect = e-122
 Identities = 278/658 (42%), Positives = 367/658 (55%), Gaps = 70/658 (10%)

Query: 38  VERGWLRALDKAFVAFLSDLDPQADPLVLVAAALTSHQLGHGHVCLDLYETLKEPDFALS 97
           VE   LR LD   V F   +     P V +AAAL SH  G GHVCL L            
Sbjct: 11  VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRL--------- 58

Query: 98  LPPEGDQQSAPMLLPSQLLAALDGAAWCQALAASMLVAEVGDLSAEARQKPLVLAERRLY 157
              E ++ S P LL + +    +   W + L AS  V+  GD        P++L   RLY
Sbjct: 59  ---ENNEASHP-LLATCVSEIGELQNWEECLLASQAVSR-GD-----EPTPMILCGDRLY 108

Query: 158 LRRYWTYERRIAAALRQRLAQRETPPEGLPQRLDALFGPADSSPQAVIDWQKLACALATR 217
           L R W  ER +A    +     E     L Q LD LF  +D      I+WQK+A A+A  
Sbjct: 109 LNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDE-----INWQKVAAAVALT 163

Query: 218 KGFSIITGGPGTGKTTTVVRLLALLQAPAVQSGQPLRIRLAAPTGKAAARLTESISQQVQ 277
           +  S+I+GGPGTGKTTTV +LLA L   A   G+  RIRLAAPTGKAAARLTES+ + ++
Sbjct: 164 RRISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALR 221

Query: 278 SLDVSDDVRQKIPSEVTTVHRLLGSRPGTRHFRHHAGNLLPLDVLVVDEASMIDLEMMAN 337
            L ++D+ +++IP + +T+HRLLG++PG++  RHHAGN L LDVLVVDEASMIDL MM+ 
Sbjct: 222 QLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSR 281

Query: 338 LLYALPAHARMVLLGDKDQLASVEAGAVLGDLCRDAEEGFYSPDTQAWLEAVSGEDLGKG 397
           L+ ALP HAR++ LGD+DQLASVEAGAVLGD+C  A  GF + +    L  ++G  +  G
Sbjct: 282 LIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGF-TAERARQLSRLTGTHVPAG 340

Query: 398 GLRQGDAQQHPLAQQVVMLRHSRRFGQGSGIGQLARLVNQQQDQQARALLSAGSHDDLFA 457
                  +   L   + +L+ S RFG  SGIGQLA  +N+      + +      D    
Sbjct: 341 ----TGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTDIEKR 396

Query: 458 LALKGEQDLKFERLVLDGLGRGEQGPQGYRHYLNVLAAERPADDSALDDACWTRWARSVL 517
           L   GE          D +   E+   GY  YL++L A    D               ++
Sbjct: 397 LLQSGE----------DYIAMLEEALAGYGRYLDLLQARAEPD--------------LII 432

Query: 518 SAFDAFQLLCAVRKGPWGVEGLNQRITHALFSAKLI--ESEQQWYEGRPVLMTHNDYGLG 575
            AF+ +QLLCA+R+GP+GV GLN+RI   +   + I      +WYEGRPV++  ND  LG
Sbjct: 433 QAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALG 492

Query: 576 LMNGDIGITLRLPERDGEGKQVLRVAFPRNDGSEGVRFVLPSRLNEVETVYAMTVHKSQG 635
           L NGDIGI L       +  Q  RV F   DG+  ++ V PSRL E ET +AMTVHKSQG
Sbjct: 493 LFNGDIGIAL-------DRGQGTRVWFAMPDGN--IKSVQPSRLPEHETTWAMTVHKSQG 543

Query: 636 SEFAHTALILPEALNPVLTKELIYTGITRAKHWFSLIEPRQGIFEEALRRKVKRLSGL 693
           SEF H ALILP    PV+T+EL+YT +TRA+   SL    + I   A+  + +R SGL
Sbjct: 544 SEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGL 600