Pairwise Alignments

Query, 458 a.a., transcription termination factor NusA from Synechocystis sp000284455 PCC 6803

Subject, 493 a.a., transcription elongation factor NusA from Pseudomonas fluorescens FW300-N2E3

 Score =  199 bits (507), Expect = 1e-55
 Identities = 133/434 (30%), Positives = 224/434 (51%), Gaps = 37/434 (8%)

Query: 12  MISEISKRNNLPTTAVEEALREALLKGYERFRRSQLMGHQFPEEYFNNFEVELDTEEEGF 71
           ++  +S    +P   + EAL  AL    ++         +F +E   +  VE++     +
Sbjct: 8   VVESVSNEKGVPANVIFEALELALATATKK---------RFEDEV--DLRVEINRHTGAY 56

Query: 72  RVLSTKRIVEEVENSDQQISL--KEVLEVAEEAQLGDEVVLDVTPEQKDFGRMAAIQTKQ 129
                  +VEE +  D  +     +V E    A++GD  V++   E  +FGR+AA   KQ
Sbjct: 57  ETFRRWTVVEEADLDDPAVETWPSKVQETHPGAKVGD--VVEEKIESIEFGRIAAQTAKQ 114

Query: 130 VLLQKLRDQQRKIIQEEFQDLEGTVLNARALRFERQSIIVAVQSSFGQPEVEAELPKREQ 189
           V++QK+R+ +R  + + +++  G +++    +  R ++IV + ++      EA L + + 
Sbjct: 115 VIVQKVREAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNN-----AEALLAREDI 169

Query: 190 LPNDNYRANSTFRVYLKRVREGSQRGPQLVVSRAAAGLVVDLFSVEVPEIEEEVVRIVAV 249
           +  + +R     R  LK +R    RGPQL++SR A  ++++LF +EVPEI E ++ ++A 
Sbjct: 170 ISRETFRVGVRLRALLKEIRT-ENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAA 228

Query: 250 AREAKPPSPSVGPRTKIAVDTLERDVDPVGACIGARGSRIHAVVNELRGEKIDVIRWSPD 309
           +R+        G R KIAV + ++ +DP GACIG RGSR+ AV  EL GE++D++ W  +
Sbjct: 229 SRDP-------GSRAKIAVRSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDN 281

Query: 310 PATYIAQALSPARVDQVYLIHAEERHAL-VIVAEDQLSLAIGKEGQNVRLAARLTGWKID 368
           PA ++  A+SPA V    +I  E+ HA+ + V  D L+ AIG+ GQNVRLA++LTGW ++
Sbjct: 282 PAQFVINAMSPAEV--AAIIVDEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLN 339

Query: 369 IKDPETYARDKEAIEQSILERAAASAQARAEREAAEQEAQAKLEAEMAALEAEEAEELEE 428
           +         ++A    IL           E E  E  AQ  ++    +LE      LEE
Sbjct: 340 VMTESDIQAKQQAETGDILRNFI------DELEVDEDLAQVLVDEGFTSLEEIAYVPLEE 393

Query: 429 TPEAIAEVEEEVEE 442
                   E+ V E
Sbjct: 394 MLNIDGFDEDTVNE 407