Pairwise Alignments

Query, 1031 a.a., RND efflux system, inner membrane transporter from Sphingobium sp. HT1-2

Subject, 1049 a.a., efflux protein from Sinorhizobium meliloti 1021

 Score =  785 bits (2027), Expect = 0.0
 Identities = 429/1028 (41%), Positives = 636/1028 (61%), Gaps = 9/1028 (0%)

Query: 4    DMKGINLSRWALTHQQMVGFLLVLAAVAGLFSYMALGRKEDPEFTVKTMMITVGWPGATA 63
            D K  NLSRWA+ H  +  FLL L  + G    + +G++EDPEFT + M++   WPGA+ 
Sbjct: 7    DKKPFNLSRWAIGHPSIARFLLALIIITGGLGLLRMGQREDPEFTFRVMVVQAVWPGASI 66

Query: 64   QQMSQQVIKPIETVLTENIAEIDYVKSKARPGQATLNVTLISTVKSSAVPDIWYRIRKTV 123
            Q+M  QV+  IE  L E    +D+V+S  R G A + V +     +  V D +Y++RK V
Sbjct: 67   QEMEDQVVNKIERKLQET-PHLDFVRSYTRAGSAIITVQIEGDTNADEVADAFYQVRKKV 125

Query: 124  TDNRADLPNGVVGPAFNDEFGTTYGNIYAVTGDGFSYPVLKRYAETLRDRIQALPDVAKT 183
             D   +LP GV+GP FNDEFG T+  +++++GDGFSYP LKR+A   RD + A P V K 
Sbjct: 126  GDIANELPEGVLGPYFNDEFGDTFITLHSISGDGFSYPELKRFAIEGRDMLLATPGVEKV 185

Query: 184  QIIGAQDEAIYVTYDSARLAMSGISAQAIADALDTTNAVAASGIVEAGAERVRMQVTGDF 243
             ++G Q E IY+   S  LA  G++   + +A+   N V  +G V+ G   VR+ V GD 
Sbjct: 186  VVLGDQPEKIYIDLSSKVLAERGLTFNDLRNAIAGQNNVDYAGSVDTGTRSVRISVEGDV 245

Query: 244  ASVEAIAATPIVANGKSVRLDAIAKVERKPVHPATFRMRFGAKDAVGVGISLRSDGDVAR 303
              VE I    + A  +++RL  IA V      P   + RF   D+V +G+ +    +V  
Sbjct: 246  TKVEDIRELRLRAGDRTIRLGDIATVTSGLEDPYARKFRFNGHDSVQIGVVMAKGFNVTD 305

Query: 304  LGEDLKHTIAALQSEMPVGVDIHTVSDQTRVVDESVGEFTTSLIEAIVIVLAVNFLSLGW 363
            +G+ ++ T    +S +P GV +  VS+Q  VV E++ EF+ +LIEA++IVL V+FLS+GW
Sbjct: 306  VGKAVEATYDRFESALPYGVSVDQVSNQPEVVTEAITEFSHALIEALIIVLIVSFLSIGW 365

Query: 364  RPGIVVALCIPLVLAMTFVCMLYVGIDLQRISLGALIIALGLLVDDAIIVVEAVATHLEA 423
            R G+V+A+ IPLVLA TF  M  +GIDLQRISLGALIIALGLLVDDA+IVVE +   LE 
Sbjct: 366  RSGLVIAIAIPLVLAATFAIMYELGIDLQRISLGALIIALGLLVDDAMIVVEMMERKLEE 425

Query: 424  GWTRTRAAVSAYSVTAVPMLVGTLITVAGFLPIAMSKATASEYVISLFQVIAISLILSWV 483
            G  +  AA  AYS TA PML GTLIT AGF+P+  +++TA EYV SLF V+ I+L++SW 
Sbjct: 426  GLEKIDAASFAYSSTAFPMLTGTLITTAGFIPVGFAESTAGEYVRSLFYVVGIALVVSWF 485

Query: 484  VAVIFTPFIAYHLLPQRADARDDAGEPEEQYEGRFYGWFRRMLDRCLDRRKTVVAVALAM 543
            VAV FTP++ Y +L Q    R  AG   + ++ RFY   R  +   +  R  V+ + LA+
Sbjct: 486  VAVYFTPWLGYMILKQ----RHHAGTHHDVFDTRFYRRLRTTVGWAVRHRVVVLLMTLAI 541

Query: 544  FVGSMLLFQIGVPRQFFPASDRPELVVDLQLSQNASFAQTQAVAARMEQLLARDDRVVST 603
            FV S+  FQ  +P+ FFP S RPE++VDL L +  S  + +  A  +E+ +  D+     
Sbjct: 542  FVTSLWAFQF-IPKNFFPQSSRPEILVDLWLPEGTSIKEVEKQAKALEERMMDDEDKRFI 600

Query: 604  TAYLGGGSPRFYLPLNVQTPDITLAELVLQTRDEEAREGVIASIQSLFATHFPEARGRVS 663
              Y+G G+PRF+LPL+ Q  +   A+L++  +DE ARE +IA ++++ A  FP  R +V 
Sbjct: 601  ATYIGEGAPRFFLPLDQQLRNPNFAQLLVMAKDEPARERLIAKLRTILAEDFPSIRAKVD 660

Query: 664  RLENGPSVGQPVQYRVAGPDLTQIMPVAKRLEELIRADSHARDVNSDLGEPLKAIRVDLD 723
            RL  GP  G PVQ RV GPD  ++  +A +++   + +     ++ D  EP+ A+++ +D
Sbjct: 661  RLFLGPPTGWPVQMRVMGPDREEVRRIADQVKTKFQENPMLGAIHDDWLEPVPAMKLVID 720

Query: 724  QDKVRALGLSTQAVQQSLQAAIGGAGTTSFRDRDLALEVVLRLSAAERTDLGRIANLPIS 783
            QD+ RALG+++Q ++Q LQAA+ G    SFRD +  + ++ R     R  L  + ++ + 
Sbjct: 721  QDRARALGITSQRIRQMLQAAMSGVPLDSFRDGEETVSIMAREPGGNRHLLSAVQSVYVP 780

Query: 784  TP-NGAVPLAQLGHVSAGSEPAVIYQRNRQPTITISADV-EGEQASDLTKRIEPQIEALR 841
            T   G VP++Q+  V    E  + ++R+R PTIT+   + +G Q +D+  ++  +++ LR
Sbjct: 781  TDFGGFVPVSQIAKVVPVMEQGIEWRRDRLPTITVRGTLPDGVQPNDVAMQLFDELKGLR 840

Query: 842  RDLPSGASIVKGGSEEQSSINQKATMAAVPFAIFVIVILLMLQLQNVKRMLVVLATGPLA 901
              L  G  +   G  E S+ +Q +  A  P  + VIVILLM+QLQ+  + ++VLATGPL 
Sbjct: 841  DGLAPGYKVEIQGGAEDSAESQASIAAKAPIMLVVIVILLMVQLQHFGKAMLVLATGPLG 900

Query: 902  LIGVALIMALFRIPFGFVAMLGSLALFGMVLRNSVILIAQIDTLSGHGLAMREAVREAAV 961
            +IG A  + +   PFGFVA+LG +AL G+++RNS+IL+ QID     G+   EA+  AAV
Sbjct: 901  IIGAAAALLISGAPFGFVAILGVIALLGIIIRNSIILVDQIDQDIAAGMERSEAIIGAAV 960

Query: 962  HRLRPILLTALAAILAMIPLTRSTFWGPMAWAIMGGLMVATILTLIVLPALYELVFDR-P 1020
             R RPI+LTAL A+LA+IP++R  FWGP+A+A+MGG++VAT+LT++VLPA Y L F + P
Sbjct: 961  RRFRPIILTALTAVLALIPISRGVFWGPLAYAMMGGILVATVLTILVLPAGYALFFGKEP 1020

Query: 1021 QHRADSQE 1028
            + R    E
Sbjct: 1021 KSRKTDPE 1028