Pairwise Alignments

Query, 384 a.a., efflux protein from Sinorhizobium meliloti 1021

Subject, 358 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  187 bits (476), Expect = 3e-52
 Identities = 126/358 (35%), Positives = 188/358 (52%), Gaps = 7/358 (1%)

Query: 15  LLTAILLGAV--LSGCSQEKVETKETIRPVKVVEIAAAGEPRELHYSGSVRARTEMNLGF 72
           +L A  LG +  L+ CS E+   ++ +R V VV        R    +G VRAR + +L F
Sbjct: 4   ILIAAALGGIFALASCSSEEPPAEKPLRTVDVVAAEKKPVDRGSVITGEVRARVQTDLSF 63

Query: 73  RVGGKITERLVNIGDRVKPGDILARIDATDYRLAVTSAEANLLAAEKQVQTTALAKLRAE 132
           RV GKI ERLV++G RVK G +LARID  + +  +  A ANL +AE Q     L   R +
Sbjct: 64  RVSGKIIERLVDVGARVKTGQLLARIDPEEQKADIDVALANLQSAEAQQTQAQLTFDRQQ 123

Query: 133 QLFTKSFSSQAQLDQA--TLLYDQAVSTRDAAASSLSQAKNQVSYTDLKADQNGIVTAVN 190
            LF    +S++ +D+A  TLL  Q      +A + L  A++ +SYT+L+AD +G++TA N
Sbjct: 124 NLFKTQVTSRSAVDKAQETLLTTQGAVR--SAQAQLDTARDALSYTELRADADGVITARN 181

Query: 191 ADIGQVVGTGTPVVTVAVDGEKEVEIAVPEIDVTEFKPGKPVGVRFWSNDMLVLDGHVRE 250
            ++GQV      V T+A DG ++    V E    E      V V   S+   ++   VRE
Sbjct: 182 VEVGQVAQAAQLVFTLAHDGPRDAVFDVYESLFLERDIDNLVNVSLLSDPAQIVAAPVRE 241

Query: 251 VSGSADQRSRTFSVRVSLPNDERVLLGMTATVEAAAASSAPLVSIPLSALSKKDGQNIVW 310
           +S + D  + T  V+V L  D  + LG   +           + +P SA++ +DG   VW
Sbjct: 242 ISPTIDPDNGTIRVKVGLNGDMTMPLGAPVSGH-FRFRQIDAIELPWSAMASQDGAPAVW 300

Query: 311 IVDRDFSTVHARPIKLADFADNGVRVVDGLGAGDLVVAAGTQFMAEDLKVRLQAGEQQ 368
           +VD   S V  RP+++AD+      V +GL  GDLVV  GT+F+    KV  + G+ Q
Sbjct: 301 LVDPRSSEVAMRPVQVADYETGQFVVTEGLNPGDLVVTVGTKFLRAGEKVAYEKGQAQ 358