Pairwise Alignments

Query, 320 a.a., ribosomal large subunit pseudouridine synthase B from Sinorhizobium meliloti 1021

Subject, 287 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Erwinia tracheiphila SCR3

 Score =  124 bits (310), Expect = 4e-33
 Identities = 89/245 (36%), Positives = 129/245 (52%), Gaps = 12/245 (4%)

Query: 85  LARALSKLGYCSRTQAEKLIAEGRVSVAGRKITDLSHWVD-IEADRIAVDGTVIAAQARV 143
           L + L++ G+ SR + E +I+ GRVSV G K+  L   ++  +A +I +DG +++     
Sbjct: 5   LQKVLARAGHGSRREIETMISAGRVSVDG-KLAGLGDRIEPSKALKIRIDGHLVSIAEST 63

Query: 144 -----YLMLNKPRGLVTTRDDPEGRPTVFSCLDNVDVPSLSPVGRLDKASEGLLLFTNDT 198
                 L   KP G + TR+DPEGRPTVF  L  +       VGRLD  + GLLLFT D 
Sbjct: 64  EDVCRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123

Query: 199 VLAQRLLDPETHLGKVYHVQVRGIFGEAMAARMVEGV-TEGGELLRALRVERLKGGDR-N 256
            LA RL+ P   + + Y V+V G   +    ++  GV  E G    A +  +  GG+  N
Sbjct: 124 ELANRLMHPGREVEREYAVRVFGQIDDEKLKQLSRGVQLEDGP--AAFKTLKFSGGEGIN 181

Query: 257 SWIEIELDEGRNRQIRRMLDVLGFECLRLLRVSIGEIRL-GDLPKGASRPLTEAEALYLR 315
            W  + L EGRNR++RR+ + +G +  RL+R   G+I L   LP+G    L      YLR
Sbjct: 182 QWYNVTLTEGRNREVRRLWESVGVQVSRLIRTRYGDIDLPKGLPRGGWTELDLTPVNYLR 241

Query: 316 RRTGL 320
              GL
Sbjct: 242 ELVGL 246