Pairwise Alignments

Query, 401 a.a., secretion protein HlyD (RefSeq) from Shewanella amazonensis SB2B

Subject, 376 a.a., efflux RND transporter periplasmic adaptor subunit from Pseudomonas fluorescens SBW25-INTG

 Score = 74.7 bits (182), Expect = 4e-18
 Identities = 85/299 (28%), Positives = 141/299 (47%), Gaps = 41/299 (13%)

Query: 112 ITLAPQLEVRVLERHVVPGEEVKQGEPLLTLGGAA----IAQAQADYINAATEWSRISRM 167
           + L+ ++   V +     G++VK G+PL+ L  A     +  AQAD   A  ++ R S++
Sbjct: 70  VNLSLEVAGTVKDVQFASGQKVKAGQPLVQLDSAVESALLETAQADLGLAQLDYGRGSQL 129

Query: 168 -GESAVSQSSRLQARVDYELKRAILESIKMTPKQIKALEAAPDSIGSFKLLAPINGRVQQ 226
            G  A+S+        +++   A L+  K T  Q+KA      S+    ++AP +G +  
Sbjct: 130 VGSQAISKG-------EFDRLSAQLQKNKATVNQLKA------SLAKKHIVAPFSGTIGI 176

Query: 227 DVASRGQVLAAGSPLMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVS---GRWLKAKV 283
                G  LA+G+ +  L D S L+V+  +       +A+G   +V+VS   G      V
Sbjct: 177 RQVDVGDYLASGTVIATLQDISSLYVDFYIPEHSVPKVALGQAVQVAVSAYPGEPFPGSV 236

Query: 284 IGRSHELNPITRTEQVLLSMANPGHEVHAGEFAEL--LLPQNSRQGIVLPDAALSRSGDG 341
              + ++   TR   V  ++ANP  ++  G F  L  LLP  + Q IV+P++A++ +  G
Sbjct: 237 SAINPKVENSTRNVLVRATLANPEGKLLPGMFTSLDVLLPNPAAQ-IVVPESAITYTLYG 295

Query: 342 DWQVFV-----------EDADG-----FEALEVEIEARARGLNLV-KGLEPGQRVVMSG 383
           +    V           +DADG      E   VE   R  GL LV KGL+ G++VV +G
Sbjct: 296 NSVYAVAEKKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAG 354