Pairwise Alignments

Query, 401 a.a., secretion protein HlyD (RefSeq) from Shewanella amazonensis SB2B

Subject, 374 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 70.9 bits (172), Expect = 6e-17
 Identities = 73/245 (29%), Positives = 112/245 (45%), Gaps = 22/245 (8%)

Query: 117 QLEVRVLERHVVPGEEVKQGEPLLTLGG-----------AAIAQAQADYINAATEWSRIS 165
           +L  ++ E +V  G  V QG+ L  L             A++AQ QAD   A +   R  
Sbjct: 73  ELSGKLSELNVDSGANVHQGQVLAKLDTRLLEAERQEIQASLAQTQADVDLATSTLKRNL 132

Query: 166 RMGESAVSQSSRLQARVDYELKRAILESIKMTPKQIKALEAAPD-SIGSFKLLAPINGRV 224
            + +S       L    + + + A LE+ K   K++ A + A    +    LLAP +G +
Sbjct: 133 ELKKSGYVSEQLLD---ETQTQLASLEAAK---KRLLASQHANQLKLDKSHLLAPFDGII 186

Query: 225 QQDVASRGQVLAAGSPLMQLTDESYLWVEAELTPAQSRGLAMGSYARVSVSGRWLKAKVI 284
            Q   + G+V+AAGSP   L           +  A +   + G   +VSV  +   AK+ 
Sbjct: 187 SQRQHNLGEVVAAGSPAFTLVGSMNTEAYIGVPVAIANQFSTGQNVKVSVHNQPFTAKIA 246

Query: 285 GRSHELNPITRTEQVLLSMANPGH-EVHAGEFAELLLPQNSRQ-GIVLPDAALSRSGDGD 342
           G S E+NPI+RT Q+ +S+  P H +V  GE A L   Q   Q G  +P +AL     G 
Sbjct: 247 GMSAEVNPISRTVQLRISL--PEHAKVINGEIAYLHQQQTVEQAGYWVPISALIDGIRGR 304

Query: 343 WQVFV 347
           W ++V
Sbjct: 305 WNIYV 309