Pairwise Alignments

Query, 588 a.a., DNA damage response helicase (yejH or radD) (from data) from Shewanella amazonensis SB2B

Subject, 579 a.a., type III restriction enzyme, res subunit (RefSeq) from Shewanella loihica PV-4

 Score =  729 bits (1882), Expect = 0.0
 Identities = 365/578 (63%), Positives = 441/578 (76%), Gaps = 4/578 (0%)

Query: 13  IKLRDYQQDAIEATLAHFRTSRESALLVLPTGAGKSLVIAELARLAKGRVLVLTHVKELV 72
           ++LRDYQ+ A++A + HF+ S +SALLVLPTGAGKS+VIAELAR+AKGR LVLTHVKELV
Sbjct: 1   MQLRDYQRQAVDAAINHFKRSDDSALLVLPTGAGKSIVIAELARIAKGRTLVLTHVKELV 60

Query: 73  AQNAQKVDALAGNASIFSAGLGEKDSGGKTVVAGIQSAAVNVAAFDEPFSLVIIDECHRV 132
           AQNA+KV  L   ASIFSAGL +K +  KTVVA IQSA  N   FDEP+SLVIIDECHRV
Sbjct: 61  AQNAEKVGLLTDEASIFSAGLKQKSTRNKTVVASIQSAVRNPKQFDEPYSLVIIDECHRV 120

Query: 133 SLDENSQYRQVFSQLREKNPDLLLLGLTATPYRLGEGAIYKRHVRGHVGNPDKGVFDVCI 192
           S ++ SQY+Q+ S LR KN  L LLGLTATPYRLG G IY+ H  G +GN ++ VF+ CI
Sbjct: 121 SNEKESQYQQLLSHLRTKNSKLRLLGLTATPYRLGSGWIYRYHYHGKIGNTEQPVFEHCI 180

Query: 193 FELPIRSLIKQGYLTEPLLLDGLAAQYNFAALKASEDADYQEAEVQAILDTSTRATTTIM 252
           FELP+R LIKQG+LT P +LDGL+AQY+F+ L  + + +Y EAEV ++L  + RAT  I+
Sbjct: 181 FELPMRPLIKQGFLTPPKVLDGLSAQYDFSELSPNANGEYNEAEVDSLLHHAGRATKAIV 240

Query: 253 GQLKALAQQRLGVIIFAATVRHAKEIMALLDE-SAALITADTPGPERDNIITAFKAQELK 311
            Q+K L   R G IIFAATVRHAKEIM LLD   A LITADTP  ERD II AFK +EL 
Sbjct: 241 EQIKQLTNTRAGTIIFAATVRHAKEIMTLLDSPEAGLITADTPSQERDAIIDAFKRRELS 300

Query: 312 FLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRLFPGKAECLILDYAANGFS 371
           +LVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLR+  GK +CL++DYAANGF 
Sbjct: 301 YLVNVAVLTTGFDAPHVDLIAILRPTASVSLFQQMVGRGLRICEGKRDCLVIDYAANGFD 360

Query: 372 LYHPDVGKPRPDSKSVPVQVPCPACGFANLFWGKADTDGDIIEHYGRRCQGLLDDG---N 428
           L+ P+VG+P+PDSKSVPVQVPCP CGFAN+FWG  D DGDIIEH+GRRCQ ++DDG   +
Sbjct: 361 LFFPEVGRPKPDSKSVPVQVPCPECGFANVFWGLVDGDGDIIEHFGRRCQAVVDDGDGKH 420

Query: 429 QCDFRFRARICPDCGAENDIAARVCRGCDSALVDPDKHLKAVLAHKHHHLFKVTDMLLGA 488
           QCDFRFRA+ CP+CG ENDIAA+VC+ C S L+DPDK LK VL  KHHHLF+  +ML  A
Sbjct: 421 QCDFRFRAKACPNCGEENDIAAKVCQHCQSTLIDPDKRLKEVLQQKHHHLFRCQEMLFEA 480

Query: 489 TDAGLEVTYLDMDGNSFIERFKMQTPGQRKALYALFLLRHQRAPGLALPKYPDAKALIKD 548
            +  L V YLD++GN F   F   T  Q +A Y +F+ +H R PG   P +     +I  
Sbjct: 481 DNDRLRVRYLDIEGNDFCCYFNFATKAQIRAFYGVFVHQHTRTPGQKQPTFSKVDQVIAA 540

Query: 549 SAKFRAPELLLLKKSKFGWQLVDKFFDYRGKYQTRARF 586
              FR P+LLLLKK K GW+LV+ FFDYRG++ ++ +F
Sbjct: 541 RDYFRMPDLLLLKKGKRGWELVESFFDYRGRFDSQHKF 578