Pairwise Alignments

Query, 1289 a.a., ATP-dependent helicase HrpA (RefSeq) from Shewanella amazonensis SB2B

Subject, 1303 a.a., hypothetical protein from Pseudomonas sp. DMC3

 Score = 1223 bits (3164), Expect = 0.0
 Identities = 650/1284 (50%), Positives = 880/1284 (68%), Gaps = 31/1284 (2%)

Query: 20   DVARIRRELRDIERLGDETAKAAAFERLAERAEAAKAKVDARLSARPRIHYPDNLPVSQK 79
            D  R+RR+L ++ +  DE    A   +   R +A+  +V AR ++ P I Y D+LP++ K
Sbjct: 22   DRHRLRRQLLELRKKPDE----AKLAQWVVRTQASCDQVLARRASLPVIRYDDSLPIAAK 77

Query: 80   RDDIAEAIAKHQVVIVAGETGSGKTTQLPKICLELGRGSRGLIGHTQPRRLAARSVATRV 139
            RD+I +A+ +HQV+I+AGETGSGKTTQLPKICLE+GRG  GLIGHTQPRR+AARSVA+RV
Sbjct: 78   RDEIKKALEQHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPRRIAARSVASRV 137

Query: 140  ADELQSPLGEAVGFKVRFADAINENSYIKLMTDGILLAELSSDKYLNQYDTLIIDEAHER 199
            A+EL +PLGE VG++VRF D  + N+ IKLMTDGILLAE  +D+YL +YDT+I+DEAHER
Sbjct: 138  AEELGTPLGELVGYQVRFEDQSDANTLIKLMTDGILLAETQNDRYLERYDTIIVDEAHER 197

Query: 200  SLNIDFILGYLKQLLPRRPDLKVIITSATIDVDRFSTHFDKAPVIEVSGRTYPVETRYRP 259
            SLNIDF+LGYLK LLPRRPDLKVIITSATID++RFS HFD AP++EVSGRT+PVET YRP
Sbjct: 198  SLNIDFLLGYLKTLLPRRPDLKVIITSATIDLERFSKHFDDAPIVEVSGRTFPVETWYRP 257

Query: 260  LVKDD-------EPDLDLMDGIFEAVDELMA------EGPGDILIFMNGEREIRDTAEQL 306
            L  +        E DL +   I   +DE+ A        PGD+L+F+ GEREIRD A+ L
Sbjct: 258  LTLEQDEEGNRVEDDLTVDQAILATLDEIAAYERSERRSPGDVLVFLPGEREIRDAADML 317

Query: 307  SRRQYRDTEVLPLYARLSYGEQSKVFKSHTGRRIVLATNVAETSLTVPGIRYVIDPGTAR 366
             + Q + TE+LPLYARLS  EQ ++F+SH GRR+VLATNVAETSLTVPGIRYVID GTAR
Sbjct: 318  RKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVPGIRYVIDSGTAR 377

Query: 367  ISRYSYRTKVQRLPIEPISQASANQRQGRCGRVGPGICIRLYEETDFLSRPEFTDPEILR 426
            ISRYSYR KVQRLPIE ISQASANQR+GRCGRV PGIC+RLY E DFL RPEFTDPEILR
Sbjct: 378  ISRYSYRAKVQRLPIEAISQASANQRKGRCGRVEPGICVRLYSEEDFLGRPEFTDPEILR 437

Query: 427  TNLASVILQMLAIGLGDIKGFPFIQPPDERHIKDGFLLLEELQAIKLKKGLPQMTPLGRK 486
            TNLA+VILQML + LG+I  FPFI+PPD + I DGF LL+EL A+       Q+TPLGR+
Sbjct: 438  TNLAAVILQMLHLRLGEITAFPFIEPPDGKAISDGFNLLQELSAVDRNS---QLTPLGRQ 494

Query: 487  LAHVPLDPRLARMVIEAADRGALHEALVVTSALSIQDPRERPLEKKQAADEAHSRFADKD 546
            LA +P+DPR+ RM++EAA  G+L E L+V SA+SIQDPRERP E++QAAD+AH+++ D D
Sbjct: 495  LARLPVDPRMGRMLLEAAKLGSLQEVLIVASAMSIQDPRERPPERQQAADQAHAQWKDPD 554

Query: 547  SDFVSLLNLWNYIKEQQKALSASQFRKLCKQEYLAYLRVREWQDLYTQVRQSVHELKLKL 606
            SDF  L+NLW   +EQ++AL+A+  R  C++ +L YLR+REW+D + Q+     +++L L
Sbjct: 555  SDFAGLVNLWRGFEEQRQALTANPLRNWCRKNFLNYLRLREWRDSHRQLSLICRDMQLSL 614

Query: 607  NSVPADYDSLHRALLSGLLSHVGFKDNNNEYLGARNRRFYVFPGSPLAKKGPKWIVAAEL 666
            N  PADY  LH+A+L GLLS +G K  + +YLGAR RRF++ P S + KK P+W++ AEL
Sbjct: 615  NKEPADYPKLHKAVLVGLLSQIGQKTEDGDYLGARQRRFWIHPSSGIGKKRPQWLMTAEL 674

Query: 667  TETSRLFARGCAKIEPEWLEELAAHLIKKQHNEPQFEANQGAVVAFENQVLYGLTVVNRR 726
             ET++L+AR  AKI+ +W+E LA HLIKK H EP +E  +G VVA+E   L+GL VV RR
Sbjct: 675  VETTKLYARMVAKIDADWIEPLAGHLIKKNHFEPHWEKKRGQVVAYEQITLFGLIVVGRR 734

Query: 727  KVQYGPINAIEAREIFIRSALAEGQLKTREAFFLHNQKLLEEVESLEHKSRRRDILVDEQ 786
             V YGP++ + +RE+FIR  L  G++++R      NQKLLE+++ LE K+RRRDIL DE+
Sbjct: 735  PVHYGPVDPVVSRELFIREGLVRGEIQSRAKCLSANQKLLEQLDELEAKARRRDILADEE 794

Query: 787  VLFDFYNERLPEGIYNAPKLFSWWKEARRKQPELLNFNEDMLYARQTGHISKLDFPDVWH 846
             L+ FY+ RLP  I+      SW+K   +K P+LL   E+ + AR+   ++  D+PD  H
Sbjct: 795  TLYAFYDARLPAEIHQTATFDSWYKVNSQKDPQLLIMREEDVLAREASEVTARDYPDTLH 854

Query: 847  QGNLSFALSYHFEPGAEDDGVSVHIPVALLNQVEDSGFDFLVPGLREEKCIALIKSLPKS 906
             G+L  AL+YHFEP    DGV++ +P  LL  +     ++LVPGL E KCIAL+++LPK+
Sbjct: 855  IGDLELALTYHFEPNHPRDGVTLRVPAPLLPMLPPERLEWLVPGLIEVKCIALVRNLPKA 914

Query: 907  LRRNFVPAPDYARAAVQAMSL-DLPLLESLSKQLLRMTGTRVSGEDF--VLTELPKHLLM 963
            LR+NFVP PD+ +AA+Q M+  +  L ++L ++LLRMTG RVS E +     ++  HL M
Sbjct: 915  LRKNFVPVPDFIKAALQRMTFAEGSLPQALGRELLRMTGARVSDEAWAEAAQQVESHLRM 974

Query: 964  HFKIEDDHGKLVGEGRDLDALKASLQGVVAKAIRQVAKSGIEQAGLTEWSIDDLPAQFQR 1023
            + +I D  GK +GEGRDL  L A      ++A   V +S   Q  +       +  + Q+
Sbjct: 975  NLEIVDGLGKFLGEGRDLAELTARF-AEASQAALAVPQSAKSQQPVEAKVFAPVAEKTQQ 1033

Query: 1024 KKGNYEVKAFPALVDEKESVAVKLFDDEHQAQKAHAQGVRRLLLINIPSPVKHLQQALPN 1083
            K     +  +PALV+E  +V    F    +A+  H + ++RLL+  +  P K L+  LP 
Sbjct: 1034 KIAGLSMTVYPALVEEGGTVKEGRFSTPAEAEFQHRRALQRLLMQQLAEPAKFLRGKLPG 1093

Query: 1084 KAKLAMYFNPFGQVQLLIEDIIDAAV-AQILDEQRLEVRTKAGFDVARDAVRADLNSVAE 1142
            + +L + +   G+V  L+EDI+ A++ + IL+ +    R  AG     +  R +    AE
Sbjct: 1094 QTELGLLYRELGRVDALVEDILLASLDSCILEGEDPLPRDGAGLAALAERKRGNWTEHAE 1153

Query: 1143 QISLKVEQILTLHNQIKKRLKGKISLDIAFAMSDIQTQLDRLVYKGFVADCGHARLSDII 1202
            +++    +IL + + ++KR KGKI L  A A++DI+ Q+  LVY GFV +     L +  
Sbjct: 1154 RVARLTLEILKIWHGLQKRFKGKIDLAQAVALNDIKQQIGNLVYPGFVRETPMQWLKESP 1213

Query: 1203 RFLKAIEHRLEKLPVDPVRDKL---QLLSIHKVEQALEAQLAKVPKSQPVPEHLLEARWL 1259
            R+LKA+E R EKL     +D++   +L  +    Q   A+ A+  K  P    L   RW 
Sbjct: 1214 RYLKAVEQRFEKLGAQVQKDRVWSGELAGLWTQYQTRAAKHAQEGKRDP---QLELYRWW 1270

Query: 1260 IEELRVSLFAQVLGTSVPISEKRV 1283
            +EE RVSLFAQ LGT VPIS+KR+
Sbjct: 1271 LEEYRVSLFAQQLGTKVPISDKRL 1294