Pairwise Alignments

Query, 937 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 683 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  169 bits (427), Expect = 7e-46
 Identities = 200/698 (28%), Positives = 273/698 (39%), Gaps = 79/698 (11%)

Query: 235 ALERAVEAYGQAIRRAPDSFEAHNNLAQALRDLGRRDEALVHAERAASLRPHDVTVLNTQ 294
           AL  A++  GQA    P+   A +NL + LR  GR  EA  H  +A    P         
Sbjct: 35  ALFAALDTLGQA--GTPEEAVARSNLGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNW 92

Query: 295 ANILRGLRRVDEAVAILERALACDGRSAETHSNLGLALLAAQDRQRAEEHFRKAAALAPD 354
              L+ L R  EA A    A       A    N G+ L        AE   R+A  L   
Sbjct: 93  GVTLQALGRPAEAAAAYGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALELDHA 152

Query: 355 CVDIIVNLACFLIHINAGKEVLGVLEPALARFPGDVGLLATLGLHYFQENAYEDCATVFE 414
            V   + LA                  AL R  GD+                +  A  F 
Sbjct: 153 LVPARLALA------------------ALHRDRGDL----------------DRAAAGFR 178

Query: 415 TVLAKKPDHVEARASLGVV---RWSQGRLVESLALA-----QSIREDFPEDIRTLFLLGC 466
             L+  PD  E +A+L +    R  +G   E  A +     +++R   P+    L  L  
Sbjct: 179 ACLSLMPDLAEGQANLALALKERGQRGGPAEDAAASIVGFDRALRIGLPDAGGVLAQLVQ 238

Query: 467 VHSDLME----NASALEVFDLAVEKGGERVPPFHYSNCCFSFHYVEAMEKDDLFARHRRW 522
               L       A +  + DL  E   ++  P+              + +    A  R  
Sbjct: 239 QRRHLCRWAGLGALSARLVDLVREGRTQQAYPWI------------VLGEGAGPALERAC 286

Query: 523 DALYGAGATELSDVTHHNTRDPERRLRIGYVSPDFRRHSVAYFFLPLVGAHDRAAVEVT- 581
              Y    T           D   +LRIGY+S DF  H+ A     L+  HDR   E+  
Sbjct: 287 AERYSGWKTRGIRPGFPKRTDRGAKLRIGYLSTDFHEHATAVLIAELIERHDRDRFEIIG 346

Query: 582 CYSLSTLTDQMTDLIREGCDRWRDITTLPAEKAAERVREDEIDILVDLSGHTANNGLSIF 641
           C         +   +  G DR  D++ L  E AA  + E  +DILVDL GHT N    I 
Sbjct: 347 CSYGPDDGGPLRKRLVAGFDRLLDLSALTDEAAARLIHEAGVDILVDLKGHTQNARPGIA 406

Query: 642 ALKPAPVQVTYLGYPNTTGLSAIDYRLTDGFADPLGVDEDPASETLWRLPRSFLLFDE-- 699
           A +PAPVQ  +LGYP T G +AIDY + D    P    +    E +  LP S+   D   
Sbjct: 407 AYRPAPVQAQWLGYPGTLGSTAIDYVIADAVVAPAD-HQRFYCERIVHLPDSYQPNDRQR 465

Query: 700 ----VPGLPDPAPPPVLSRGTITFGSFNNMAKVNRGCVAVWKRILDAVPGSRLLLKAKGF 755
                PG  D   P   + G + F +FN   K+       W RIL  VPGS L L     
Sbjct: 466 SIGPTPGRADCGLP---AEGFV-FCAFNAPYKIGPDLFGRWCRILQRVPGSVLWL----L 517

Query: 756 RDPA-TAKVLIERLIDWGVDPEQVSYAPYAKNLMEHVAVYAEVDIALDTFPYNGTTTTFE 814
             PA  A  L     + GV PE++ +AP       H+A +   D+ LD+ P    TT  +
Sbjct: 518 DGPAEVAANLRGAAAERGVAPERLIFAPRLPG-PAHLARHRLADLFLDSAPVGAHTTASD 576

Query: 815 ALHMGVPVIGLRGHRHSGRVGASILGNLGLADRLLGEDVDDMVAKAVALAGDLEGLMRMR 874
           AL  G+PV+ + G   +GRV AS+L  +GL  +L   D D   A A  LA     L  ++
Sbjct: 577 ALWAGLPVLSVPGRSFAGRVAASLLRAVGL-PKLAVADWDAYEATAQRLAEQPAELAALK 635

Query: 875 AGLRERLRASPLQDGPGFVADLEGAYRAMWRRWCAGPP 912
             L +    +PL D   F   +E A+  MW    AG P
Sbjct: 636 LRLEQACATAPLFDTDRFARSIESAFATMWDIHAAGEP 673



 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 60/178 (33%), Positives = 73/178 (41%), Gaps = 20/178 (11%)

Query: 191 ALAALGEGEAAREAFKNAILRDGAAPMAWTNLGNLEIRAARSADALERAVEAYGQAIRRA 250
           AL  LG+     EA            +A +NLG    R  R A+A       + +A+   
Sbjct: 39  ALDTLGQAGTPEEA------------VARSNLGETLRRQGRLAEAEAH----HRKALDWL 82

Query: 251 PDSFEAHNNLAQALRDLGRRDEALVHAERAASLRPHDVTVLNTQANILRGLRRVDEAVAI 310
           PD    H N    L+ LGR  EA      AA L P        Q  +LR L R+DEA A 
Sbjct: 83  PDFGGNHYNWGVTLQALGRPAEAAAAYGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAA 142

Query: 311 LERALACDGRSAETHSNLGLALLAAQ--DRQRAEEHFRKAAALAPDCVDIIVNLACFL 366
           L RAL  D   A   + L LA L     D  RA   FR   +L PD  +   NLA  L
Sbjct: 143 LRRALELD--HALVPARLALAALHRDRGDLDRAAAGFRACLSLMPDLAEGQANLALAL 198



 Score = 43.1 bits (100), Expect = 6e-08
 Identities = 51/170 (30%), Positives = 67/170 (39%), Gaps = 7/170 (4%)

Query: 102 EVLERAGDVAPMNAVFPRMLGAHYRALGQVGAAITAARRAVAVESADGENWRGLAATLLG 161
           + L +AG   P  AV    LG   R  G++  A    R+A+      G N      TL  
Sbjct: 41  DTLGQAG--TPEEAVARSNLGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQA 98

Query: 162 -GAPGEALEALERAKTCGDDGADWWNIRGVALAALGEGEAAREAFKNAILRDGAAPMAWT 220
            G P EA  A   A       A     +GV L  LG  + A  A + A+  D A   A  
Sbjct: 99  LGRPAEAAAAYGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARL 158

Query: 221 NLGNLEIRAARSADALERAVEAYGQAIRRAPDSFEAHNNLAQALRDLGRR 270
            L  L     R    L+RA   +   +   PD  E   NLA AL++ G+R
Sbjct: 159 ALAALH----RDRGDLDRAAAGFRACLSLMPDLAEGQANLALALKERGQR 204



 Score = 32.7 bits (73), Expect = 8e-05
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 6/124 (4%)

Query: 49  FGLTRVALGRPLEAEQPLRRALALDPIDDPFHARAVCALVDVLKAQGRMAEVSEVLERAG 108
           +G+T  ALGRP EA      A  L     P  A A C    +L+  GR+ E    L RA 
Sbjct: 92  WGVTLQALGRPAEAAAAYGEAARL----MPGFAPAPCNQGVLLRELGRLDEAEAALRRAL 147

Query: 109 DVAPMNAVFPRMLGAHYRALGQVGAAITAARRAVAV--ESADGENWRGLAATLLGGAPGE 166
           ++          L A +R  G +  A    R  +++  + A+G+    LA    G   G 
Sbjct: 148 ELDHALVPARLALAALHRDRGDLDRAAAGFRACLSLMPDLAEGQANLALALKERGQRGGP 207

Query: 167 ALEA 170
           A +A
Sbjct: 208 AEDA 211