Pairwise Alignments

Query, 515 a.a., PAS domain-containing protein from Rahnella sp. WP5

Subject, 521 a.a., Aerotaxis receptor Aer from Pseudomonas fluorescens FW300-N2E2

 Score =  276 bits (706), Expect = 1e-78
 Identities = 187/538 (34%), Positives = 285/538 (52%), Gaps = 61/538 (11%)

Query: 1   MRNNQPISQREYQYPDDATLMSTTDAESRITYANDAFIEVSGFASEDIIGQPHNVVRHPD 60
           MRNNQP++QRE  +P    L+STTDA+  ITY NDAF+++SG++ E++I  PHN+VRHPD
Sbjct: 1   MRNNQPVTQRERTFPAQQRLISTTDAKGVITYCNDAFVDISGYSKEELIRSPHNLVRHPD 60

Query: 61  MPPSAFKDMWATLQQGFPWTALVKNRRSNGDHYWVRANVVPIIRGGKTKGYLSVRTKPTT 120
           +P + F  MW TL+QG PW  +VKNR  NGDHYWV A V P+  G +  GY SVR KP+ 
Sbjct: 61  VPSAVFAHMWGTLKQGLPWMGIVKNRSKNGDHYWVNAYVTPVFEGNQVVGYESVRVKPSA 120

Query: 121 AEINATQALYDKMNRGELNNRRLHRGLLIRTGITRSFSILKTLSVRWRIRNGLLVLLVLN 180
            +I   +ALY ++N+G             ++ +  S   +  L      ++ L  +LV  
Sbjct: 121 EQIARAEALYQRINQG-------------KSAVPGSDKWVPML------QDWLPFILVSQ 161

Query: 181 -SLVISALTALPVIQMNTALALNAFFILLLNFW-MEWQ------ITRPVEQLCSQTLRVA 232
            S V+ A      +  +   AL A   + L    ++WQ      + R  EQ  S  L +A
Sbjct: 162 LSFVVGAF-----LDSSWGFALAAVLSVPLGLMGLQWQQRGIKRLLRLAEQTTSDPL-IA 215

Query: 233 SGASHTITPMERVDEIGMTLRSVGQLGLICRWMVDD----VNDQAHKVRTASESLANGNE 288
              + +     R++   M++ S       C   + D    +NDQA +  T + + ++G E
Sbjct: 216 RMYTDSRGVQARLE---MSILSQEARLKTCLTRLQDTAEHLNDQARQSNTLAHNSSSGLE 272

Query: 289 ALSQRTEQTAANVGQTAAAMNEMSTTVESNTQTAAEADKLSLIASAAAEKGSNAMQE--- 345
                TEQ A  V Q AA   E+++ V+       EA++L+      A +   A++    
Sbjct: 273 RQRVETEQVATAVNQMAATTQEVASHVQRTADATQEANRLTSRGRDIAGETREAIERLSV 332

Query: 346 VVG----TMQEITGSSRQIATITNVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE 401
           VVG    T+ ++   S +I  + +VI GIA QTN+LALNAA+EAARAGE G+GFAVVA E
Sbjct: 333 VVGETGQTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADE 392

Query: 402 VRSLAQRSASAASEIKRLI-------DSSVETVVSGSKQVD-------QAGKTMADIVSQ 447
           VR LAQR++ +  +I  LI        ++V+T+ +G +Q +       +A + +  I   
Sbjct: 393 VRQLAQRTSESTGQIHALIAKLQQTATNAVQTMDAGHRQAEEGVARVMEADEALVGISEA 452

Query: 448 VRNVTSLIGQIRSATGEQNQGLLDIAKAIEELDRITHQNSIQVQEGANASSGLKQQAD 505
           V ++T +  QI +AT EQ+    +I++ I  +  +  Q S Q    A  S  L + A+
Sbjct: 453 VAHITDMTTQIAAATEEQSSVAEEISRNISNISELADQTSGQAHSSALLSEELTRTAN 510