Pairwise Alignments

Query, 275 a.a., putative Amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

Subject, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 80.1 bits (196), Expect = 4e-20
 Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 20/260 (7%)

Query: 15  LLATATQAFAGATLERV-ESRKEMVNVLMES-YPPFSFLNDHNQLDGYDVDVAKAVADKL 72
           L+A A   FA   L  + +++ E + V  ++ +PP  F+ ++ +  G+DV++ +A+   L
Sbjct: 7   LVAAALSGFAFFGLAGMAQAQGEPLRVATDATFPPMEFV-ENGKRTGFDVELVEAIGKTL 65

Query: 73  GVKLRLETPSWDVIAAGRWSGRYDICICSMTPSKARAEVFDFPVEYYASPAVIVVNASDE 132
           G K+      +  +  G  S R+D+ +  +  +  R +V DF V YYA   V++V   + 
Sbjct: 66  GRKIEWIDIDFKGLVPGLISKRFDMAVSGIYITDERKKVVDFTVPYYAGGLVVMVKDGNT 125

Query: 133 RIHDAKDLEGRKVGSISASSYESYLNKNLVIEGKEDQKIDYPFDFVQAAPYDTENVAFQD 192
            I    D+ G+KV     +   SY  +               F  VQ    +     F  
Sbjct: 126 AIKTPADINGKKVSVQVGTKSVSYTKEK--------------FPQVQLMEVEKNQEMFNL 171

Query: 193 LGLGTGVRLDAIITNLVTAQPRLQQDKRFKLAGAPLYEEPNAVAIEKGDPEWDAKVREVF 252
           + +G   R DA +T    A   ++     K+    +  E   +AI K  PE    V    
Sbjct: 172 VDIG---RADAAVTGKPAAYQYVRTRGGLKVLPEQITTEEYGMAIRKDTPELTKAVNGAI 228

Query: 253 AELKADGTLAKLSQKWIGAD 272
            +LKADGT  ++ +KW  A+
Sbjct: 229 EKLKADGTYDQIVKKWFSAN 248