Pairwise Alignments

Query, 409 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

Subject, 423 a.a., cation efflux system protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 90.9 bits (224), Expect = 6e-23
 Identities = 90/393 (22%), Positives = 174/393 (44%), Gaps = 39/393 (9%)

Query: 38  AEGHEHKAESAKGQVSQEQAHDKE----REQGDEAALGGEEAHGGELVLSEEQRQLAGIR 93
           AEGH+H+AE A      + +H+ E     + G  A     + H  E++L + +   AG++
Sbjct: 47  AEGHDHEAEGA------DHSHEGECSGGHDHGKAATSEPADEHSDEIILPKAKANAAGVK 100

Query: 94  VEQVSSQGFS-LAAVATATLVVDRERTVTLVPQLDVRVLARHVVPGQEVAKGQPLLTLG- 151
           V  ++   F  +   +   L    + +V +     V      V  G  V +G PL+T+  
Sbjct: 101 VNAITPAPFQQVIKTSGQVLAAQGDESVAVATVAGVVSFRGKVTEGMSVGRGTPLVTISS 160

Query: 152 -----GAAVAQAQADYINAAAEWSRVKRMSQSAVSASRRLQAQVDAELKRAILGALKMTP 206
                G  V +A+  Y  +  E+ R+K + ++ + + +   AQ +   + A +       
Sbjct: 161 HNIADGDPVQRARIAYEVSKKEYERMKSLVKNKIVSDKDF-AQAEQNYENARIS------ 213

Query: 207 AQIKALESDPETIGSYQLLAPLDGRVQQDVAMKGQVFSGGTALMQLTDESHLWVEAQVTP 266
              +AL  +   IG   + AP+ G V+  +  +G   + G  L+ +T    L++ A+V+ 
Sbjct: 214 --YEALAKNHSAIGQ-NITAPIAGYVKSILVNEGDYVTIGQPLVSVTQNRRLFLRAEVSE 270

Query: 267 TQSQQIKVGSKALVKVGDFSLEAEVIGRSHEIDSVTRTE-------QILVAFANPGHVLH 319
                ++  S A  +    +   E+   S  + S  +T         +   F N G V+ 
Sbjct: 271 KYYPYLRTISSANFRTPYNNEVYELNELSGRLLSFGKTSGDNSFYVPVTFEFDNKGEVI- 329

Query: 320 AGQFAEIYLADNNQDGVI-LPDAALTRGGDGDWQVFVE-EGDGFEAVEVEV-SERQRGMN 376
            G F E+YL  +  + VI +P  ALT    G + V+++ + +G++  EV + ++  + + 
Sbjct: 330 PGSFVEVYLLSSQLENVISVPRTALTEE-QGIFFVYLQLDEEGYKKQEVTLGADNGKSVQ 388

Query: 377 LVQGLSPKMRVVVSGAFFLASEQAKSGFDIHNH 409
           ++ G+ P  RVV  GA+ +    A +    H+H
Sbjct: 389 ILTGIKPGDRVVTEGAYQVRLASASNAIPAHSH 421