Pairwise Alignments

Query, 460 a.a., DEAD/DEAH box helicase domain-containing protein (RefSeq) from Shewanella loihica PV-4

Subject, 423 a.a., ATP-dependent RNA helicase SrmB from Vibrio cholerae E7946 ATCC 55056

 Score =  283 bits (724), Expect = 8e-81
 Identities = 166/420 (39%), Positives = 241/420 (57%), Gaps = 11/420 (2%)

Query: 16  FSDFSLDKRLLTSLEHMGIDTPTEIQTQSIPVGLSGRDLMASSKTGSGKTLAFLLPAMQR 75
           F+D  LD  LL ++E MG   PT++Q ++IP  L GRD++AS+ TG+GKT AF++PA+Q 
Sbjct: 5   FADLELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKTAAFVIPALQY 64

Query: 76  VIATKALSKRDPRVLILLPTRELATQVYSQLRLLVANTQYKAIKILGGENFNDQAKALAR 135
           ++          R+LIL PTRELA QV  Q + L  NT+     I GG  + + A  LA 
Sbjct: 65  LLDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITGGVQYQEHADILAT 124

Query: 136 DPHFVVATPGRLADHLAQRHLYLNGLELLILDEADRMLDLGFAEQLRAINQAADHKRRQT 195
               VVATPGRL +++         +E LILDEADRMLD+GF   +  ++      R+QT
Sbjct: 125 TQDIVVATPGRLLEYIDAERFDCRAIEWLILDEADRMLDMGFGPTVDRLSTEC-RWRKQT 183

Query: 196 LMFSATLDHGQINEIAAELLKEPEHVAIGASHVENQDIAQKIYLCDNLSHKEQLLTRLLQ 255
           L+FSATL+   +    A+LLK+P HV       E + I+Q  +  D++ HK +LL ++L 
Sbjct: 184 LLFSATLEGRGVEGFTADLLKDPAHVDAEPPRRERKKISQWYHRADDMPHKVELLKKIL- 242

Query: 256 LEPHKQVIIFTATRGDTDRLAGVLAEQGFSTSSLSGELKQAARNQIMDQFSRGQQQILVT 315
            E  ++ I+F  TR     L   L +     + + GE+ Q  RN  + +F  G   IL+ 
Sbjct: 243 TEQAERSIVFLKTRERLADLRAELEKAQIPCAWIQGEMPQDRRNNAISRFREGDVNILLA 302

Query: 316 TDVASRGLDLLNVSLVINFDMPKFAEEYIHRIGRTGRAGAKGDAISLVGPKDWVNFKQVQ 375
           TDVA+RG+D+ ++S VINFD+P+ A+ Y+HRIGRTGRAG KG AISLV   D     +V+
Sbjct: 303 TDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKKGIAISLVEAHDQPMMARVE 362

Query: 376 NFLRKSFEFSELEELAPKFKG--LKDKPSQEKRLG-------KQQAKPKAKTAKAASSTK 426
            ++++  +   ++ L PK K    K K    K+         K  +KPKAK  K  ++TK
Sbjct: 363 RYIKEEVKERFIDGLRPKHKKPVFKKKKKDIKKTADKGAVKKKTTSKPKAKATKKKAATK 422