Pairwise Alignments

Query, 641 a.a., helicase c2 (RefSeq) from Shewanella loihica PV-4

Subject, 653 a.a., Rad3-related DNA helicases from Kangiella aquimarina DSM 16071

 Score =  449 bits (1156), Expect = e-130
 Identities = 245/648 (37%), Positives = 386/648 (59%), Gaps = 20/648 (3%)

Query: 9   VQQVFAPDGSLSRHIKGYSCRVQQQTMATRVSETLQKGDNLVVEAGTGVGKTYAYLVPAL 68
           ++++F+ DG L+ + +G+  R +Q+ MA  +   +    ++ +EAGTG GKT+AYLVPAL
Sbjct: 7   LEELFSADGLLADYFEGFVRRSEQEQMAQSIESAIHDETSICIEAGTGTGKTFAYLVPAL 66

Query: 69  LS----GKQVIVSTGSKNLQEQLFFKDLPALLNILGIRPKVALLKGRSNYLCQYLMEKQL 124
            S      ++IVSTG+KNLQ+QL+F+DLP +   L I PK+ALLKGR+NYLCQY +++ L
Sbjct: 67  KSWYEQDTKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYLCQYRLQQSL 126

Query: 125 SGVEVNDGKILDDLLRIDQWASQTVDGDIGSLYAVPENSPAIPLVVSSKESCIGKACDHY 184
                    ++D L R++ W+ QT  GD+     + +N P    V S+ E+C+G  C  Y
Sbjct: 127 ESGRFQSRSMVDTLSRVNDWSVQTSSGDLTQCTDLADNDPLWSYVTSTNENCLGSECPDY 186

Query: 185 EACFTRKARAKALDAKIIVVNHHLFFADRILKETGFAELLPDSDVVIFDEAHLLPDIAVT 244
             CF  KAR +A+ A ++VVNHHL  AD +LKE GF ELLPD+D+V+ DEAH L DIA +
Sbjct: 187 AECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGFGELLPDADIVVVDEAHQLADIAHS 246

Query: 245 YFGQQLSIKSLIRLLERFNELYRTQMADSPQIGAMTARCHTQLLHWQ-GLLFATEERDWR 303
           ++G++L+ + L+ +         T   D  Q+     R    +   +  L  + ++++W+
Sbjct: 247 FYGRRLTSRQLMEICRDTELEALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKNWQ 306

Query: 304 RLIGDKALMEASWALVSELTAYRTMLLGYLGRNEAFDDGVEKIDGLLSKLTVFIQCDNPD 363
           +++  +   +    L  EL+A  + L  +  R++  D   ++ +  L  L  F   D   
Sbjct: 307 QIVNPQR-KQLFAELKKELSALHSRLERHASRSKGLDSCHKRAEECLHTLAFFSDKDQEL 365

Query: 364 SAYS-IDYGYQHLTLRISPIKV----AKECQSLFSPDVSWIFTSATL-----QINRDLSL 413
           +A   ++   Q   +  +P+ V    A+ C+       +W+FTSAT+     +   D   
Sbjct: 366 TAVRWVETYRQGFAVLETPLDVSQAFAQSCRE--QSTRTWVFTSATITQASSKGTSDFKH 423

Query: 414 FTKAMGLEKANTSILDSPFDYRRQSLFCVPRHLASVTSQERAARQLVEVAVKAINAAKGR 473
           F + +GL++A    L SPFDY  Q+L  +PR LA   S++       +  +  + A  G 
Sbjct: 424 FKERLGLDEARDLELPSPFDYDAQALLHIPRGLADPRSKD-FINSWQQAVLPIVEANPGG 482

Query: 474 TFMLFTSHRMLNLVAVMLQGR-IDYPLLVQGQAGKQTLLKKYRQLGNAVLLGTGAFWEGV 532
           TF+LFTS+  ++ V  + + + +D  +L+QG+  K  L++ +R+ GNAVLL T +FWEGV
Sbjct: 483 TFVLFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFRETGNAVLLATSSFWEGV 542

Query: 533 DVRGKLLSCVIIDKLPFVSPDDNLYKARADGVQREGKDPFMTLSLPQAVIALNQGVGRLI 592
           DV+G  LSCVIIDKLPF +PD+ L +A+   +++ GK+PF  L +P+A+IAL QG GRLI
Sbjct: 543 DVKGLALSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAIIALKQGAGRLI 602

Query: 593 RDEKDRGVLILCDNRIVNRPYGQAFINSLPPMHRTRDLDSAVHFLQTI 640
           RD+ DRGVL+LCD R++   YG+ F+ SLPPM RTR+  + + FL+ +
Sbjct: 603 RDQTDRGVLVLCDPRLIANAYGKRFLRSLPPMRRTREQKTVIEFLKNL 650