Pairwise Alignments

Query, 283 a.a., flagellar motor protein from Dechlorosoma suillum PS

Subject, 308 a.a., sodium-driven polar flagellar protein PomB (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.5 bits (223), Expect = 4e-23
 Identities = 70/282 (24%), Positives = 122/282 (43%), Gaps = 56/282 (19%)

Query: 18  WLVSYADFITLLFAFFVVMYAISSVNEGKYRVLSDSLITAFKNPSIVDGGAITVVPKRT- 76
           WL ++AD ++LL  FFV++ + S ++  KY+ ++ S+  AF   + V+   +  +PK T 
Sbjct: 14  WLATFADLMSLLMCFFVLLLSFSEMDVMKYKQIAGSMKYAFGVQNKVE---VKDIPKGTS 70

Query: 77  ----------PDSVVKQIVVKEDPKVVE--------------AKQQQ------------- 99
                     PD    +I+ ++  ++ E                QQQ             
Sbjct: 71  VIALEFRPGRPDPTPIEIINQQTNEMTEPVLDLQAGEDDSSGGTQQQNGSQRGGEASATA 130

Query: 100 --------------RDKMRNVAKDIFAVLAPLVQQGKVRVLETARGVTIEINDSILFAPG 145
                         +DK+    K +   L   +  G + +    + + I I +   FA G
Sbjct: 131 QETEDAVKAEAAAAQDKINQQVKKMAQELNQEIADGAIEIESLGQQIIIRIREKGSFASG 190

Query: 146 QAQLEQTSIRAMRAVGEVLAPTDFPITIEGHTDNIPIRTAQFPSNWELSAVRATTVLRLF 205
              L+      +R+VGE+L      IT+ G+TD++ I    + SNW+LS+ RA  V  + 
Sbjct: 191 SGFLQPRFKPVVRSVGELLKDVPGIITVSGYTDDMQISDELYSSNWDLSSKRAVAVADVL 250

Query: 206 VDA-GVAPTHLTAIGYGETRPVEMNETVEGRARNRRVSILID 246
           +   G  P  +  +G     P+  N++ + RARNRRV I I+
Sbjct: 251 LQVKGFDPKRMKVVGMASNNPIVPNDSPDNRARNRRVEIAIE 292