Pairwise Alignments

Query, 256 a.a., ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 262 a.a., ABC-2 from Pseudomonas syringae pv. syringae B728a

 Score =  314 bits (805), Expect = 1e-90
 Identities = 152/250 (60%), Positives = 198/250 (79%), Gaps = 2/250 (0%)

Query: 7   IAFKSILTKEINRFTRIWVQTLVPPAITMTLYFLIFGNLVGSRIGEMGGVSYMEFIAPGL 66
           IA K+I+ +E++RF RIW QTL+PPAITM LYF+IFGNL+G +IG+MGG +YM++I PGL
Sbjct: 13  IALKTIVYREVHRFMRIWPQTLLPPAITMVLYFVIFGNLIGRQIGDMGGFTYMQYIVPGL 72

Query: 67  IMMSVITNSYSNVASSFYSAKFQRNLEELMVAPVPHYVMIAGYVGGGVARGLCVGLIVTL 126
           IMMSVITNSY NV SSF+ AKFQ ++EELMV+PV  + ++ GY  GGV RGL VG IVT+
Sbjct: 73  IMMSVITNSYGNVVSSFFGAKFQHSIEELMVSPVSPHTILVGYTLGGVLRGLMVGFIVTM 132

Query: 127 VAMFFVDISLHHAGLVVMTVFLTSVLFSLGGLINAVFAKSFDDISIIPTFVLTPLTYLGG 186
           ++MFF D+ +HH G+ ++ V LT+ +FSL G INAVFA++FDDISIIPTFVLTPLTYLGG
Sbjct: 133 LSMFFTDLQVHHLGVTIIVVVLTATIFSLLGFINAVFARNFDDISIIPTFVLTPLTYLGG 192

Query: 187 VFYSLSLLPAFWQGVSALNPVVYMINVFRYGFLGFADISVPLSIGIMVGFCAALW-GVAY 245
           VFYS++LLP FWQ VS  NPV++M+N FRYG LG +DI + +++  M+     L+ G A 
Sbjct: 193 VFYSINLLPPFWQTVSLANPVLHMVNAFRYGILGVSDIKISIALAFMIVATFVLYIGCAR 252

Query: 246 YLISRGIGLR 255
            L+S G G+R
Sbjct: 253 LLVS-GRGMR 261