Pairwise Alignments

Query, 257 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 260 a.a., UPF0246 protein YaaA from Variovorax sp. SCN45

 Score =  231 bits (589), Expect = 1e-65
 Identities = 117/259 (45%), Positives = 175/259 (67%), Gaps = 4/259 (1%)

Query: 1   MLILVSPAKTLDFEQPPLTQIH-TRPDFLAQ---SQELIQVCQQLTPSDIATLMKVSDSI 56
           ML L+SPAK+LD++ P   +I  T+P F +    S ELI++ ++ +P  I+ LM +SD +
Sbjct: 1   MLFLLSPAKSLDYDTPIPAEIPATQPHFESPRGPSVELIKLLREKSPLQISELMHLSDKL 60

Query: 57  AGLNAARFGEWKPDYSIDNAKQAIFAFRGDVYTGFDADTLTAAQLERTQSQLRILSGLYG 116
           + LN AR+  W    +  NA+QA FAF GDVY G DA TLT AQL   Q  + ILSGLYG
Sbjct: 61  SALNVARYEAWSSRSTAKNARQAAFAFDGDVYGGLDARTLTTAQLAWAQDHVCILSGLYG 120

Query: 117 LLRPLDLILPYRLEMGTALTNQKGKNLYEFWGNTLTDAVNSAVAAQGDGIIINLASNEYF 176
           LLRPLDL+ PYRLEMGTAL N+ GK+LY FWG+ + + +N  +AA    +++N+AS EYF
Sbjct: 121 LLRPLDLLQPYRLEMGTALANRHGKDLYAFWGSRIAEHLNERLAADRTPVVVNVASQEYF 180

Query: 177 KAIKPKFLNGQLITPVFKDFKNGQYKVISFFAKRARGMMARYIIDQQVSSIDGLKAFEVD 236
           K++  K L  +++  VF+++K  +YK++SFFAKRARG++AR+ +  + ++   L+ F+++
Sbjct: 181 KSVDRKVLKARVVECVFEEWKGDKYKIVSFFAKRARGLLARWAVQHKAATPKALEKFDLE 240

Query: 237 GYYYSEELSKPNEPTFLRE 255
           GY +  ++S      F R+
Sbjct: 241 GYGFDAQVSTAERLVFRRK 259