Pairwise Alignments

Query, 456 a.a., flagellar hook-associated protein FliD (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 445 a.a., flagellar capping protein from Dechlorosoma suillum PS

 Score =  205 bits (521), Expect = 3e-57
 Identities = 143/459 (31%), Positives = 232/459 (50%), Gaps = 28/459 (6%)

Query: 1   MAISATGMGSGLDISNIVKVLVDAEKAPKEAMFNKTEDSIKAKVSAMGTLKSALSTFQDA 60
           M IS+ G+GSGLD++++V  L+  E+ P  ++  K + +   ++SA G +KS L  F+ A
Sbjct: 1   MGISSAGIGSGLDVNSLVSQLLQLERQPLNSLTAKKQ-TFNDQLSAFGKVKSDLDAFKTA 59

Query: 61  VKKLQTGDALNQRKISVSTDAYLSAKAEKTAQAGSYGIKVEQVATNHKIAGTNVADATQP 120
           V  L+        K + S  + L+A A  TA  GSY IK+ Q+A     A     D+   
Sbjct: 60  VSGLKLDMDFAAAKATSSNTSLLNATATNTATPGSYDIKISQLAQAGVRASAAQTDSKAA 119

Query: 121 VG-EGSLAFGVNGKSFSVDIAATDSLAEIAKKVNEAS-DNVGVTAT-------VITSDAG 171
           VG +G+      GKSF + + A+DSL  I  K+N A+    G TAT       VI +   
Sbjct: 120 VGADGTFTLSAGGKSFDIALTASDSLETIRDKINAATVTESGKTATQSLAKASVINAGTS 179

Query: 172 S----RLVFSANKTGEDNQISLTATNTSGSGVTDMFGSGNTSTLQDAKNAVLYIDGQKVT 227
           +    +LV ++ K G DN +S+ A   +  G       G T T QDAKNA L ++G +V 
Sbjct: 180 AAPQYKLVIASTKQGVDNAVSIDAALETALG-------GFTQT-QDAKNAKLSLNGLEVE 231

Query: 228 SQSNEVKNAITGVTLNLTNADVAKTTTVKIEQDNEAVKTNVQAFVDAYNSLVTTIDKMSS 287
             +N + + + GVTLNL +AD  KT  + + +D EA+   +  F+ AYN L +T++  S 
Sbjct: 232 RSTNTITDVVDGVTLNLASADSTKTVNLTVARDTEAITKKINDFISAYNKLASTVN--SQ 289

Query: 288 YDKDKKTAAALQGDSMIRSIESQLRSVASGRVPTADGGSIALYDIGIKADRYGKLSVDDT 347
           + K       L+ D+   S+  QL++V +     A      L  +GI   + G LS+D T
Sbjct: 290 HQK----GGTLEADNSATSVIYQLQNVFNDPAKIAGNDLNYLAQVGISFKKDGTLSLDST 345

Query: 348 KLNKALTEDMSSVEALFATPDKGLANRFNDLANSYVKSSGLIADRQSSYTTQQSRLADQR 407
              KAL  +  +V +LF   ++G A+R  D A++ + + GL+  R     ++   L    
Sbjct: 346 AFTKALETNSGNVVSLFTDTERGFAHRLYDTASNMLTNDGLVDSRIKGLNSRIKILDTNM 405

Query: 408 AAFTLKMDQLTARLTKQFNAMDLVVGKLNQQSSGLVDRL 446
               ++++ +  RL +Q+  +D ++G +   SS L   L
Sbjct: 406 ERENVRLENMETRLRRQYANLDSLMGTMKNTSSYLTSLL 444