Pairwise Alignments

Query, 707 a.a., fatty oxidation complex, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 729 a.a., fatty acid oxidation complex subunit alpha FadB from Serratia liquefaciens MT49

 Score =  416 bits (1068), Expect = e-120
 Identities = 257/722 (35%), Positives = 402/722 (55%), Gaps = 30/722 (4%)

Query: 4   GKTFNLTRREDGIAILTMDVPGETMNTLKAEFGPEISEILSEIKRDSSIRGLVLISGKKD 63
           G+T  L   ++GIA L  + PG ++N L       + E L+ +++ + ++GL+L S K  
Sbjct: 5   GETLQLHWLDNGIAELVFNAPG-SVNKLDTRTVASLGEALTVLEKQTELKGLLLRSTKA- 62

Query: 64  SFVAGADISMLDACQTAGDAKALSQQ---GHVVFNELEALNIPVVAAIHGACLGGGLELA 120
           +F+ GADI+   +   A  A+ L +     + +FN LE L +P ++AI+G  LGGG E  
Sbjct: 63  AFIVGADITEFLSL-FAAPAEKLQEWLVFANSIFNRLEDLPVPTISAINGYALGGGCECI 121

Query: 121 LACHQRVCSDDGKTMLGVPEVQLGLLPGGGGTQRLPRLVGITTALDMMLTGKQIRPKQAL 180
           LA   RV S D +  +G+PE +LG++PG GG+ RLPRL+G  +AL+++  GK +  K AL
Sbjct: 122 LATDFRVASPDAR--IGLPETKLGIMPGFGGSVRLPRLLGNDSALEIIAAGKDVSAKDAL 179

Query: 181 KMGLVNDVV-PQTI------LLQTAVEMALAGKQIAKPVKKSLVNQLLEGTGFGRNIIFD 233
           K+GLV+ VV P+ +      +LQ A++  L  +   +P  + L    +E       + F 
Sbjct: 180 KVGLVDAVVAPEKLVDAALKMLQQAIDDKLDWRAYRQPKLEPLKLSPIEAA-----MSFT 234

Query: 234 QAAKQVAKKTQGNYPAPAKIIDCVRQGIAKGMQKGLEVEASHFAELVVSKESEALRSIFF 293
            A   V +    +YPAP   +  +      G  + L++E + F  L  SKE+ AL  IF 
Sbjct: 235 TAKGMVMQTAGKHYPAPMTAVKTIEAAAKLGRDEALKLETASFVPLARSKEARALVGIFL 294

Query: 294 ATTEMKKETGAEGATPRKVKKAVILGGGLMGGGIASVTTTKAKIPARVKDINEKGLSNAL 353
               +K +           K+A +LG G+MGGGIA  +  K  +P  +KDI++K L+  +
Sbjct: 295 NDQFVKSQAKKRALNAEAPKQAAVLGAGIMGGGIAYQSALKG-VPVIMKDISDKSLTLGM 353

Query: 354 SYAYKLLDKGVKRRHMTPAARDNLMALMTTTTEYKGVKDADIVVEAVFEDLALKHQMVKD 413
           + A KLL+K ++R  +       +++ +  T +Y G++ A ++VEAV E+  +K  ++ +
Sbjct: 354 NEAAKLLNKQLERGKLDGMKMAQVLSTIQPTLDYAGIERAQVIVEAVVENPKIKAAVLSE 413

Query: 414 IERECGEHTIFASNTSSLPIGQIAQAASRPENVIGLHYFSPVEKMPLVEVIAHAKTSPET 473
           +E   GE T+ ASNTS++PI  +A++  RP+N  G+H+F+PV +MPLVE+I   +TS  T
Sbjct: 414 VEGLIGEDTVLASNTSTIPINHLAKSLKRPQNFCGMHFFNPVHRMPLVEIIRGEQTSDST 473

Query: 474 IATTVAFARKQGKTPIVVQDGAGFYVNRILALYMNEAAQLLLEGQSVEHLDKALVK-FGF 532
           IA  VA+A + GKTPIVV D  GF+VNR+L  Y    + LL +G     +DK + K FG+
Sbjct: 474 IAAVVAYASRMGKTPIVVNDCPGFFVNRVLFPYFAGFSLLLRDGADFRQIDKVMEKQFGW 533

Query: 533 PVGPITLLDEVGIDVGAKISPILEKELGERFKAP--AAFDKLLSDDRKGRKNGKGFYQYG 590
           P+GP  LLD VGID       ++     ER       A D +  + R G+KN  GFY+Y 
Sbjct: 534 PMGPAYLLDVVGIDTAHHAQAVMASGFPERMGKDYRDAIDVMFDNQRFGQKNQFGFYRYS 593

Query: 591 AASK---KKAVDETVYGVLGI--KPGVDKEMSAVAERCVVQMLNEAVRCLDAGIIASPRD 645
             +K   +K  DE    +L    +P        +  R ++ M+NE VRCL+  IIASP +
Sbjct: 594 QDNKGKPRKDNDEQTDALLATVSQPRQTVSDEEIIARMMIPMINEVVRCLEENIIASPAE 653

Query: 646 GDIGAIFGIGFPPFLGGPFHYIDTLGADNLVKILERYQTQYGDRFEPCQRLKAMAAEKAR 705
            D+  ++GIGFPPF GG F Y+DTLG  + V++ +RY    G  ++    L+A A     
Sbjct: 654 ADMALVYGIGFPPFHGGVFRYLDTLGTTHYVEMAQRY-AHLGALYQVPAGLRAKAERNES 712

Query: 706 FF 707
           ++
Sbjct: 713 YY 714