Pairwise Alignments

Query, 334 a.a., Holliday junction DNA helicase RuvB (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 337 a.a., Holliday junction DNA helicase B (RefSeq) from Shewanella loihica PV-4

 Score =  580 bits (1494), Expect = e-170
 Identities = 299/337 (88%), Positives = 317/337 (94%), Gaps = 3/337 (0%)

Query: 1   MIEADRLIQPQLQG---QDDVIDRAMRPKLLDEYTGQDDTRAQLKVFIQAAKNREEALDH 57
           MIEADRL+  Q QG   +D+ IDRAMRPKLLDEYTGQDDTRAQLKVFI+AA+ R EALDH
Sbjct: 1   MIEADRLVHAQPQGTEERDEQIDRAMRPKLLDEYTGQDDTRAQLKVFIEAAQKRGEALDH 60

Query: 58  MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHR 117
           MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHR
Sbjct: 61  MLIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEAGDVLFIDEIHR 120

Query: 118 LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGI 177
           LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKL+LPPFTL+GATTRAGALTSPLRARFGI
Sbjct: 121 LSPVVEEILYPAMEDYQLDIMIGEGPAARSIKLELPPFTLIGATTRAGALTSPLRARFGI 180

Query: 178 PLRLEFYNVKDLSTIVTRSAQVMGLAIDSEGATEIAKRSRGTPRIANRLLRRVRDYAEVQ 237
           PLRLEFYNVKDLS+IVTRSA+V+ L ID EGA E+A+RSRGTPRIANRLLRRVRDYAEV+
Sbjct: 181 PLRLEFYNVKDLSSIVTRSAKVLELPIDQEGAVEVARRSRGTPRIANRLLRRVRDYAEVK 240

Query: 238 HDGAVTQNVAELALNLLDVDGEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI 297
           HDG V + VAE AL++LDVD EGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI
Sbjct: 241 HDGEVNKVVAESALDMLDVDVEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETI 300

Query: 298 EDVLEPFLIQQGFIQRTPRGRIATARAYVHFGMIKPE 334
           EDVLEPFLIQQGFIQRTPRGRIATARAY HF +I+PE
Sbjct: 301 EDVLEPFLIQQGFIQRTPRGRIATARAYQHFNLIQPE 337