Pairwise Alignments

Query, 291 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 306 a.a., HTH-type transcriptional regulator PgrR from Azospirillum sp. SherDot2

 Score =  215 bits (548), Expect = 9e-61
 Identities = 111/290 (38%), Positives = 176/290 (60%), Gaps = 7/290 (2%)

Query: 5   DGISEFVAVAEAENFTLAAQRLNVSTAHVSRQIGALENRLGTKLFYRTTRKVSLTEEGTI 64
           D ++  V V ++ + + AA+RL +S + +SR+I  +ENRLGT+L  RTTR+++LT+ G  
Sbjct: 5   DDLTVLVEVVDSGSLSAAAERLGLSASAISRRIAQMENRLGTRLLARTTRRIALTDAGAT 64

Query: 65  YYRHCRQLQTGLEEAERAITDLKDSPQGLVKLTAPVAYGEKFIMPLLNDFMVQYPSVECN 124
           +    R +   L+EAE+++T++ + P+G +++T PV +G+  + PLL  ++ +YP V   
Sbjct: 65  FCLRARAILAALDEAEQSLTEMGEEPRGTLRITMPVLFGQMRVAPLLASYLRRYPGVSLE 124

Query: 125 VDLTNRTLDLIEGGYDLAIRLGKLADSSLMAKPLSSRTHYVAASPSYVEKYGEPHTLSEL 184
           V L +R   L+E G+DLAIR G+LADSSL+A+ L     +V ASP Y+E+ G P + ++L
Sbjct: 125 VSLNDRVQRLVEEGFDLAIRAGRLADSSLIARRLRPLRRHVVASPDYLERRGVPQSPADL 184

Query: 185 NQHNCLI----GNHNYWRFIEHGRERNFKVRGKLICNSGYALRDAALKGIGIVQLPDYYI 240
            +H CL          W F+   R    +  G    +S + LR AA+ G+G+ +L D+ +
Sbjct: 185 VRHECLTLLSGSGRTEWEFMAGDRREILRPSGSFQADSLWLLRHAAVGGLGLARLADFIV 244

Query: 241 EEDIHAGRLISFLDTHREAKEGIWALYPQNRHLSAKVRVLVDYLAEKLTG 290
           EEDI AGRL+  L       E I  +YP  RH+S KVR  +++L   LTG
Sbjct: 245 EEDIRAGRLVPLLSELEVTDEAIHVVYPATRHVSPKVRSFIEHL---LTG 291