Pairwise Alignments

Query, 360 a.a., HlyD family-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 365 a.a., Multidrug efflux RND membrane fusion protein from Pseudomonas putida KT2440

 Score =  140 bits (354), Expect = 4e-38
 Identities = 96/306 (31%), Positives = 157/306 (51%), Gaps = 6/306 (1%)

Query: 37  VVIAAAAMAQVRDEVEAIGTNKAYESVTITPKVTDVVTSLKFDDGDIVKKGDLLVQLQNA 96
           V +A A   Q+  +  A G  +A   V +  ++   +T + F+ G  V  G LLVQL +A
Sbjct: 41  VALATAEQVQLARQRFASGELEAVNQVQVAAEMPGRITRIAFESGQTVAAGQLLVQLNDA 100

Query: 97  EQLAKVKVAQVKVSDNQRELARISSLVTSRTVAELERDRLQTLIDTTRAELEQAQSSLND 156
            + A     Q ++ +    L R   L     V++   D   T +D  R EL+  ++ +  
Sbjct: 101 PEQALRVQLQARLRNADVVLQRSRKLRAMNAVSQELLDNAATAVDVARGELQHVEALIAQ 160

Query: 157 RSIVAPFNGRLGLRQVSVGSLVTPGTEISTLDDISKIKLDFSVPERFIQELQPGKLVEAK 216
           ++I APF G+LG+R+V  G  +  G  I +L DIS++ ++F++ E+   E+  G+++   
Sbjct: 161 KAIRAPFAGKLGIRRVHQGQYLAAGETIVSLADISQLHVNFALGEQAAPEVHAGQVLALT 220

Query: 217 AVAFPDEIFKGKVISIDSRVNPTTRAVIVRAEIPNHDLRLLPGMLMKVKL-IKRSREALM 275
             A   + F+ +V+++D  V+ T R V V+A +PN   +L PGM   V+L   +    L 
Sbjct: 221 VDAVRGQDFQARVVAVDPVVS-TARLVQVQAALPNPQGQLQPGMYAGVRLDAAQPSTVLA 279

Query: 276 LPESAIIPIQKSHFVYSVNKD----NVIERKQVTIGIRTRGWVEITDGLAIGENVVIRGL 331
           +PE+AI        V+   +D      + R QVT G R +G VEIT GL  G+ VV+ G 
Sbjct: 280 VPETAITYTAYGQTVFVATQDPQHGTRVSRVQVTTGERWQGRVEITSGLTPGDRVVVSGQ 339

Query: 332 LKVHPG 337
           LK+  G
Sbjct: 340 LKLSDG 345