Pairwise Alignments

Query, 609 a.a., excinuclease ABC, C subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 618 a.a., excinuclease ABC subunit UvrC from Rahnella sp. WP5

 Score =  696 bits (1797), Expect = 0.0
 Identities = 352/606 (58%), Positives = 448/606 (73%), Gaps = 3/606 (0%)

Query: 5   FNAQSFLRTVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIH 64
           F+ ++FL+TVTS  GVYRMYD  G VIYVGKAKDLKKRLSSYFR  + + KT+ LV +I 
Sbjct: 13  FDPKAFLKTVTSQPGVYRMYDASGTVIYVGKAKDLKKRLSSYFRVQVSSRKTETLVKNIA 72

Query: 65  HIDVTLTHSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQHEHPRLAYHRGPQRE 124
            IDVT+TH+ET+ALLLE++YIK Y P+YNVLLRDDKSYP I LS   HPRL+ HRG +  
Sbjct: 73  QIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPQIFLSADNHPRLSVHRGAKHA 132

Query: 125 KGHYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRCSAPCV-GKVS 183
           KG YFGP+PN  AVRE+L L+QKLFPIRQC++  Y +R+RPCLQYQ+ RC  PCV G VS
Sbjct: 133 KGEYFGPFPNSYAVRETLALLQKLFPIRQCENSVYSNRSRPCLQYQIGRCLGPCVKGLVS 192

Query: 184 NAEYDEQVKLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMALRRVAEQQE 243
             +Y +QV+   LFL GKD+QV+++LV +MEEA++   +E A R RDQI A+RRV E+Q 
Sbjct: 193 EEDYKDQVEYVRLFLSGKDQQVVTQLVNRMEEASKALRFEDAGRIRDQIQAVRRVTERQF 252

Query: 244 VSGNTGDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIEEVLRSFLLQFY 303
           VSGN+ D+DVIGV + SG+AC H+LFIR+GK+ GSRSY+P VP  TD+ EV+++F+ QFY
Sbjct: 253 VSGNSEDLDVIGVGFESGMACLHVLFIRQGKVLGSRSYFPKVPGGTDLGEVVQTFVGQFY 312

Query: 304 LNADIQRTIPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRASFLRLAITNATN 363
           L    QRT+P E+++     E   L  ++SE   +K  I++  R DRA +L+LA TNA+ 
Sbjct: 313 LQGSQQRTLPGEILLDFSLAEKDLLADSLSELAGRKVQIQSKPRGDRARYLKLARTNASA 372

Query: 364 AVMTRLSHKNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASCVVFNREGPHKA 423
           A+ T+L+ ++T+ QR   L + L L A I RMECFDISHTMGE TVASCVVF+  GP ++
Sbjct: 373 ALTTKLAQQSTIHQRLSELAKTLNL-AEINRMECFDISHTMGEQTVASCVVFDGNGPVRS 431

Query: 424 EYRRYNIEGITPGDDYAAMKQAISRRFDKIDASGKIPDILFIDGGLGQLRIAQQIVDEKF 483
           EYRRYNI GITPGDDYAAM Q + RR+ K     KIPD++FIDGG GQL +A  +     
Sbjct: 432 EYRRYNITGITPGDDYAAMAQVLQRRYGKTLDDNKIPDVIFIDGGKGQLGMALDVFHSLN 491

Query: 484 VNLDKA-PQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALHLIQHIRDESHRFAIT 542
           V  DK+ P LIG+AKG  RK GLETL F       +L  DSPALH+IQHIRD+SH  AIT
Sbjct: 492 VEWDKSKPLLIGIAKGADRKAGLETLFFVPEGEGIALPADSPALHVIQHIRDDSHNHAIT 551

Query: 543 GHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVAELAKVPGISIEMAQT 602
           GHR RR K R TS LE I G+GPKRR+ LL+++GG+Q +  ASV E+A+VPGISI +A+ 
Sbjct: 552 GHRQRRAKVRTTSALEEIEGVGPKRRQVLLKYMGGIQPLLNASVEEIAQVPGISIALAEK 611

Query: 603 IHDALR 608
           IH+AL+
Sbjct: 612 IHNALK 617