Pairwise Alignments

Query, 609 a.a., excinuclease ABC, C subunit (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 629 a.a., UvrABC system protein C from Azospirillum sp. SherDot2

 Score =  374 bits (959), Expect = e-108
 Identities = 221/622 (35%), Positives = 346/622 (55%), Gaps = 31/622 (4%)

Query: 11  LRTVTSSAGVYRMYDVKGDVIYVGKAKDLKKRLSSYFRKNLGNVKTQALVSHIHHIDVTL 70
           L T+  + GVYRM    G V+YVGKAK+LK+R++SY R +    +T+ +VS    ++   
Sbjct: 16  LPTLPDTPGVYRMLAADGSVLYVGKAKNLKRRVASYTRTDGLPNRTRRMVSLTRSMEFVT 75

Query: 71  THSETDALLLENDYIKQYMPKYNVLLRDDKSYPYILLSQ------HEHPRLAYHRGPQRE 124
           TH+E +ALLLE + I+  +P +N+L++DD+S+ YI++ Q      H+ PRL +HRG    
Sbjct: 76  THTEAEALLLEANLIRSLLPPFNILVKDDRSFSYIVIGQSNKRGGHDFPRLMHHRGSAER 135

Query: 125 KG----------HYFGPYPNGGAVRESLHLMQKLFPIRQCDDLYYKSRTRPCLQYQLSRC 174
           +G            FGPY +   V  ++  +Q+ F +R CDD  + SRTRPCLQ+Q+ RC
Sbjct: 136 RGTSGKGNRRESDLFGPYASPHLVGMTIAALQRAFLLRTCDDGVFASRTRPCLQHQIKRC 195

Query: 175 SAPCVGKVSNAEYDEQVKLASLFLKGKDKQVISELVAKMEEAAEQQAYEQAARFRDQIMA 234
           SAPCVG+V   +Y  QV+     L G+  +V +E    M +++++  YE AAR+RD+I A
Sbjct: 196 SAPCVGRVDEEDYAAQVQGVRDVLSGRSAEVQAEFARHMLDSSDRLEYEDAARWRDRIRA 255

Query: 235 LRRVAEQQEVS--GNTGDMDVIGVHYASGIACFHLLFIREGKIFGSRSYYPTVPAQTDIE 292
           L  +  +Q+++     GD DV+ +H   G AC    F R G+  G+R+++P V A+ +  
Sbjct: 256 LTALQSRQDINLEDTLGDADVLALHRDGGAACVQAFFFRGGRNQGTRAFFPRVDAEEEPG 315

Query: 293 EVLRSFLLQFYLNADIQRTIPKEVVISHHFEELHELEAAVSEALNKKFSIKTNVRADRAS 352
           ++L +F  Q Y +       P  +++S   E    LE A+S +     +++   R  +  
Sbjct: 316 DILAAFAAQLYADT----PPPGLLLLSEPVESAELLEEALSLSAGHHVAVECPKRGPKRR 371

Query: 353 FLRLAITNATNAVMTRLSHKNTVEQRFVLLEEILELNAPIQRMECFDISHTMGESTVASC 412
            +  A TNA +A+  RL+ ++T       +  +  L    +R+E +D SH  G   V + 
Sbjct: 372 AVEHAQTNARDALGRRLAERSTQATLLEGVARVFGLPDAPRRVEIYDTSHIQGSFPVGAM 431

Query: 413 VVFNREGPHKAEYRRYNI-EGITPGDDYAAMKQAISRRFDK-IDA---SGKIPDILFIDG 467
           VV   EG  +  YRR+ I +    G+DYA +++  +RRF +  DA   SG+ PD++ IDG
Sbjct: 432 VVAGPEGFQRNAYRRFYIRDPEAAGNDYAMLRETFTRRFHRSSDAGRDSGQWPDLVLIDG 491

Query: 468 GLGQLRIAQQIVDEKFVNLDKAPQLIGVAKGESRKPGLETLIFGDTETSFSLEDDSPALH 527
           GLGQL   +   +   + +   P L+ +AKG  R  G E   F   +   +LE + P LH
Sbjct: 492 GLGQLNAVKD--ELAMLQITDIP-LVAIAKGPDRNAGRER-FFRPGQPPLTLEPNDPVLH 547

Query: 528 LIQHIRDESHRFAITGHRNRRQKTRNTSTLESIPGIGPKRRKALLQHLGGLQEVKGASVA 587
            +Q +RDE+HR AI  HR RR K  + S ++ IPGIGP R+KALL H G    V  A + 
Sbjct: 548 FLQRLRDEAHRTAIDSHRARRMKAISHSRIDGIPGIGPARKKALLHHFGSATAVASAGLK 607

Query: 588 ELAKVPGISIEMAQTIHDALRG 609
           +L   PGIS  +A+ +++   G
Sbjct: 608 DLEAAPGISEAIARKLYEHFHG 629