Pairwise Alignments

Query, 528 a.a., rhomboid family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 625 a.a., hypothetical protein from Escherichia coli BL21

 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 60/156 (38%), Positives = 86/156 (55%), Gaps = 7/156 (4%)

Query: 364 SVLLDWGANLRQLVLDQQVWRLISNVFLHGGLMHLIFNLYGLFFAGIFLEPLLGKWRLLG 423
           S L+  GAN+  L L  + WRL+S+VFLH    HL+ N++ L   G   E +LGKWRLL 
Sbjct: 43  SALIHLGANVASLSLSGEPWRLLSSVFLHSSFSHLLMNMFALLVVGAVTERILGKWRLLI 102

Query: 424 VYLMSGLAASIASISWY-----EATISIGASGAIMGLFGVLI-MWIWMGSLPLATHMLLA 477
           ++L SG+   + S  +      +  IS+GASGAIMG+ G  I   +  G+     +    
Sbjct: 103 IWLFSGVFGGLISACYALRDSDQIVISVGASGAIMGIAGAAIATQLASGTGTHHKNQRRV 162

Query: 478 LHLTLFVSASLVMGL-LGGVDNAAHLGGLGSGLLLG 512
             L   V+ +L+ G    G+DNA H+GGL +G  LG
Sbjct: 163 FPLLGMVALTLLYGARQTGIDNACHIGGLIAGGALG 198