Pairwise Alignments

Query, 244 a.a., iron-sulfur cluster-binding protein NapG (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis JJ

 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 50/198 (25%), Positives = 81/198 (40%), Gaps = 46/198 (23%)

Query: 59  EESDFL--------SACVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMC-E 109
           EESD +        S C+ CG CV+ CP  ++ L R                +    C +
Sbjct: 205 EESDVIAEIPRIVPSLCIGCGNCVDVCP-GSIDLER----------------LKVTSCIK 247

Query: 110 DIPCIKACPSGALDPQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITL 169
              C++ CP+ A+   +      +     ++DE+ C+      C +CYR C  +  AI +
Sbjct: 248 SGKCLEVCPTTAIRIGVPEKITKRTAECYIVDEEKCIG-----CRICYRACN-VPEAILI 301

Query: 170 ERQRNQHSDHHAMFLPTVNSDTCTGCGKCEHACVLDTAAIKVLPTALA---LGKSAEHDT 226
            ++ N         LP +N + C  CG C++AC +D  AI  L T  +     K    D 
Sbjct: 302 SKETN---------LPYINPEYCVRCGLCQNACPVD--AIDYLKTETSEDLYSKRKIRDE 350

Query: 227 YLNTEETTLEMLNKGLTL 244
           + +   + LE   K   L
Sbjct: 351 FESILHSDLEEFTKNYVL 368



 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 37/154 (24%), Positives = 66/154 (42%), Gaps = 28/154 (18%)

Query: 62  DFLSACVRCGLCVEACPYDTLTLARWFDGAATGTPFFTARHIPCEMCEDIPCIKACPSGA 121
           D    C+ C  C E+CP D +++  + +      P F A    C  C +  C+++CP+  
Sbjct: 44  DLPEKCISCSACKESCPSDAISM-EFNEEFKKEMPVFDAG--SCINCGN--CVESCPTNV 98

Query: 122 LD------PQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAITLERQRNQ 175
           L+         E + +    I +LIDE+ C++     C  C   CP+  +AI+       
Sbjct: 99  LEMGTLRKEAKELLWNVPKIINLLIDEEICVS-----CGTCENACPV--DAIS------- 144

Query: 176 HSDHHAMFLPTVNSDTCTGCGKCEHACVLDTAAI 209
              H+   L  ++ + C  C  C   C ++ A +
Sbjct: 145 ---HNNTGLYEIDVNICVSCKNCLKVCPVENAIV 175



 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 46/186 (24%), Positives = 68/186 (36%), Gaps = 43/186 (23%)

Query: 66  ACVRCGLCVEACPYDTL---TLARWFDGAATGTPFFTARHIPCEMCEDI-PCIKACPSGA 121
           +C+ CG CVE+CP + L   TL +         P      I  E+C     C  ACP  A
Sbjct: 83  SCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLIDEEICVSCGTCENACPVDA 142

Query: 122 LDPQLEHISDAKMGIAVLIDEKNCLNFKGLRCDVCYRVCPLIDNAIT----------LER 171
           +      + +  + I V              C  C +VCP ++NAI           +E 
Sbjct: 143 ISHNNTGLYEIDVNICV-------------SCKNCLKVCP-VENAIVTYDEPGLSEKIEI 188

Query: 172 QRNQHSDHHAM------------FLPTVNSDTCTGCGKCEHAC--VLDTAAIKVLPTALA 217
            +N   D   +             +P +    C GCG C   C   +D   +KV  + + 
Sbjct: 189 AQNTKFDRERLGSDFKEESDVIAEIPRIVPSLCIGCGNCVDVCPGSIDLERLKV-TSCIK 247

Query: 218 LGKSAE 223
            GK  E
Sbjct: 248 SGKCLE 253