Pairwise Alignments

Query, 1300 a.a., ATP-dependent helicase (RefSeq) from Escherichia coli BW25113

Subject, 1303 a.a., ATP-dependent helicase HrpA from Pseudomonas syringae pv. syringae B728a

 Score = 1208 bits (3126), Expect = 0.0
 Identities = 641/1302 (49%), Positives = 861/1302 (66%), Gaps = 26/1302 (1%)

Query: 12   LQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQAIFQEMAKEIDQAAGKVLLREAARPEI 71
            L + LD  M+ +R R  R+LH ++K   PD  +A   +    +  +  +V  R  + P I
Sbjct: 11   LLKNLDHAMISERHRLRRQLHDLRK--KPD--EAKLAQWVARVQASCAQVTARRESVPAI 66

Query: 72   TYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGIKGLIGHTQPR 131
             Y DNLP++ K+ +I EA+  HQV+I+AGETGSGKTTQLPKIC+E+GRG  GLIGHTQPR
Sbjct: 67   RYDDNLPIAAKRDEIKEALLKHQVLIIAGETGSGKTTQLPKICLEIGRGQHGLIGHTQPR 126

Query: 132  RLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILLAEIQQDRLLMQY 191
            R+AAR+VA+R+AEE+ T  G  +GY+VRF D    NT++KLMTDGILLAE Q DR L +Y
Sbjct: 127  RIAARSVASRVAEEIGTPLGALVGYQVRFEDQSDSNTLIKLMTDGILLAETQHDRFLERY 186

Query: 192  DTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSG 251
            DTII+DEAHERSLNIDFLLGYLK LLPRRPDLK+IITSATID +RFS HFN+AP+IEVSG
Sbjct: 187  DTIIVDEAHERSLNIDFLLGYLKTLLPRRPDLKVIITSATIDLQRFSEHFNDAPVIEVSG 246

Query: 252  RTYPVEVRYRPIVEEADD----TERDQL--QAIFDAVDELS------QESHGDILIFMSG 299
            RT+PV+V YRP+  E D+     E D    QAI   +DEL+      ++S GD+L+F+ G
Sbjct: 247  RTFPVDVWYRPLTSEQDEDGNSVEEDLTVDQAILATLDELAAFERSERKSPGDVLVFLPG 306

Query: 300  EREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAETSLTVPG 359
            EREIRD A+ L K  L+HTEILPLYARLS +EQ R+FQSH GRR+VLATNVAETSLTVPG
Sbjct: 307  EREIRDAAEVLRKAQLKHTEILPLYARLSPAEQQRIFQSHPGRRVVLATNVAETSLTVPG 366

Query: 360  IKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLS 419
            I+YVID GTARISRYSYR KVQRLPIE +SQASANQRKGRCGRV  G+C+RLYSE+DF  
Sbjct: 367  IRYVIDTGTARISRYSYRAKVQRLPIEAVSQASANQRKGRCGRVEPGLCVRLYSEEDFNG 426

Query: 420  RPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDE 479
            RPEFTDPEILRTNLA+VILQM  L LG+I  FPF+E PD + I DG  LL+EL A+  + 
Sbjct: 427  RPEFTDPEILRTNLAAVILQMLHLRLGEITDFPFIEPPDGKAISDGFNLLQELSAVNREN 486

Query: 480  QASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQDPRERPMDKQQ 539
            Q     LTPLGRQL++LPVDPR+ RM+LEA K G ++E +I+ SA+S+QD RERP ++QQ
Sbjct: 487  Q-----LTPLGRQLARLPVDPRMGRMLLEAAKQGSLQEVLIVASAMSVQDVRERPPERQQ 541

Query: 540  ASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDYLNYLRVREWQDIYT 599
            A+D+ H ++ D +SDF   VNLW    EQ++ L+++  R  CR ++LNYLR+REW+D + 
Sbjct: 542  AADQAHAQWKDADSDFAGMVNLWRGFEEQRQTLTASPLRNWCRRNFLNYLRLREWRDSHR 601

Query: 600  QLRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSG 659
            QL  + ++L + VN EPA+Y + H A+L+GLLS IG K  D+ +Y GAR  RF I P SG
Sbjct: 602  QLSLICRDLQLTVNKEPADYPKFHKAILSGLLSQIGQK-TDEGDYLGARQRRFWIHPSSG 660

Query: 660  LFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMAT 719
            L KK P+W+M AELVET++L+ R+ A+ID +W+EP+A HLIK+ + EPHWE+ +G V+A 
Sbjct: 661  LGKKRPQWLMTAELVETTKLYARMVAKIDSDWIEPLAGHLIKKNHFEPHWEKKRGQVVAF 720

Query: 720  EKVTVYGLPIVAARKVNYSQIDPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEEL 779
            E++T++GL +V  R V++  IDP + RELFIR  LV GD  +R      N +L  +++EL
Sbjct: 721  EQITLFGLIVVGRRPVHFGPIDPVVSRELFIREGLVRGDILSRAKCLSANTRLLEQLDEL 780

Query: 780  EHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEG 839
            E K+RRRDIL D++TL+ FY+ RI  ++     FDSW+K  S++ P LL   +  ++   
Sbjct: 781  EAKARRRDILADEDTLYSFYEARIPAEIHQTATFDSWYKTESQKNPQLLIMREEDVLARE 840

Query: 840  AEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLR 899
            A +++   YP+    G+L L LSY FEP    DGVT+ +P PLL  +     EW +PGL 
Sbjct: 841  ASEVTAAQYPDTLRLGDLSLSLSYHFEPNHPRDGVTLRVPAPLLLSLPAERLEWLVPGLL 900

Query: 900  RELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVKPLELPLLDSLERELRRMTGVTVDRED 959
                IAL+++LPK VR+NFVP P++ +A L R+   E  L  +L REL RMTGV V  E 
Sbjct: 901  ESKCIALVRNLPKAVRKNFVPVPDFIKAALQRITFGEGSLPQALGRELLRMTGVRVSDEA 960

Query: 960  W--HWDQVPDHLKITFRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGL 1017
            W     Q+  HLK+   +VD   K L EGR L +L  A   +  +   AV      Q  +
Sbjct: 961  WAEAAQQLEGHLKMNLEIVDGSGKFLGEGRDLAEL-TARFAEASQAALAVPQTAKSQQPV 1019

Query: 1018 HIWSFGQLPESYEQKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLN 1077
               +F  + +  +Q      +  +PALV+E  +V    F    E +      L+RLLL  
Sbjct: 1020 QAKAFAAVAQKTQQNIAGLSMTVYPALVEEGGAVKEGRFSTQAEAEYQHRRALQRLLLQQ 1079

Query: 1078 IPSPIKYLHEKLPNKAKLGLYFNPYGKVLELIDDCISCGVDK-LIDANGGPVWTEEGFAA 1136
            +  P K+L  KLP + +L L     G++  LI+D +   +D  +++          G  +
Sbjct: 1080 LAEPAKFLRNKLPGQTELALLHRELGRIDALIEDILLASLDSCVLEGEAELPRDGAGLLS 1139

Query: 1137 LHEKVRAELNDTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRG 1196
            L E+ RA+  +    +AK   +IL     + KR KG++D++ A+ L+DIKAQ+  LVY G
Sbjct: 1140 LAERKRADWTEHAERLAKLTLEILKLWHGLQKRFKGKIDLSQAVALNDIKAQLSKLVYPG 1199

Query: 1197 FVTGNGFKRLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARR 1256
            FV       L +  RYL+AIE RLEKL     +DR   +++  +   +Q   +K     +
Sbjct: 1200 FVRETPAVWLKELPRYLKAIEMRLEKLPAQVQKDRVWSIELAGLWAQYQARADKHAQEGK 1259

Query: 1257 EDEDVKEIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQI 1298
             D ++   RW +EE RVS FAQQLGT  P+SDKR+ +   Q+
Sbjct: 1260 RDPELALYRWWMEEYRVSLFAQQLGTKMPVSDKRLSKQWGQV 1301