Pairwise Alignments

Query, 452 a.a., predicted membrane-bound lytic murein transglycosylase D (NCBI) from Escherichia coli BW25113

Subject, 532 a.a., lytic transglycosylase from Vibrio cholerae E7946 ATCC 55056

 Score =  284 bits (727), Expect = 4e-81
 Identities = 166/478 (34%), Positives = 260/478 (54%), Gaps = 47/478 (9%)

Query: 1   MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQARWMDDGTSIAPDG--- 57
           M+ K   + ++LLVGCQS   V        A      +    + R     T+  P G   
Sbjct: 1   MRVKFSWVLALLLVGCQSPQPVDTTTSDDQAVNPPTQSATVKKKR-KPQTTATLPAGETE 59

Query: 58  ---------------DLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM 102
                          D+W  I  + K+GIP++  +  Q++ +L+N  +L  +  RAEP++
Sbjct: 60  SVEEERVALTPQEQDDVWQRIAMQFKLGIPKDPSVDAQREWFLKNPGHLQAIASRAEPFL 119

Query: 103 YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNYDA 162
           Y I  +V++R +P+ELVLLPIVES+FDP A S  +AAG+WQ I STG+ YGLKQ   YD 
Sbjct: 120 YLITEKVEQRGLPLELVLLPIVESSFDPFAYSHGSAAGLWQFISSTGKRYGLKQNFWYDG 179

Query: 163 RRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDFWSLP 222
           RRDV A+T AAL+ +  LN+ FDGDW   +AAYNSGEGRV +AIK NK  GK  DF+SL 
Sbjct: 180 RRDVAAATDAALDYLTVLNQHFDGDWYHAIAAYNSGEGRVARAIKANKKAGKPIDFFSLD 239

Query: 223 LPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVADMAGISV 282
           LP+ET  YVPK++AL+D++ N ++YG+ +P  +    LA V     +++A  A  AG++V
Sbjct: 240 LPKETSGYVPKLIALADVIANQEKYGISIPAIENRPVLATVDPKEQLDLAIAARYAGLTV 299

Query: 283 SKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVADNTPLNSRV 342
            +L++FN          +GP  +++P +  ++   ++       ++              
Sbjct: 300 KELQSFNPAYNQWATAPNGPHQLLIPVEKVERFNLAMEENRGKGIKVVR----------- 348

Query: 343 YTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIG---------AGSSAQRL 393
           Y V+SGDTLS+IA +   + K +++ N++  ++++ G  L +          A S + RL
Sbjct: 349 YKVKSGDTLSTIADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAYALSVSNRL 408

Query: 394 ANNSD------SITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTAN--LQPGDKLTLF 443
           A           +T+ V  G+SL +IAK++ V  + + +WN       L+ G KL ++
Sbjct: 409 AKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKGQKLVIW 466



 Score = 45.8 bits (107), Expect = 3e-09
 Identities = 46/183 (25%), Positives = 74/183 (40%), Gaps = 3/183 (1%)

Query: 204 KAIKTNKARGKSTDFWSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARV 263
           K IK  + + KS D  S  +  +       +   + I  N  R G  L      +     
Sbjct: 342 KGIKVVRYKVKSGDTLST-IADKYNTTAKVIKEANQIASNQIRVGSYLFVPTSVKDEKAY 400

Query: 264 HLSSPVEMAKVADMAGISVSKLKTFNAGVKGSTLGAS-GPQYVMVPKKHADQLRESLASG 322
            LS    +AK   +         T N+G    T+       Y  + K +    +++L  G
Sbjct: 401 ALSVSNRLAKTQSVPRGQYQLTHTVNSGESLWTIAKQYNVPYQSLAKWNGMAPKDALRKG 460

Query: 323 EIAAVQSTLVADNTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSK-LKPGQS 381
           +   +       +  + +  Y VRSGDTLS IA++  V T D+ +WN L  ++ LK GQ 
Sbjct: 461 QKLVIWKDSKPTSGVIRTVTYKVRSGDTLSGIANKFKVKTADIVKWNDLNSTQYLKAGQQ 520

Query: 382 LTI 384
           L +
Sbjct: 521 LKL 523