Pairwise Alignments

Query, 315 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

Subject, 317 a.a., L-arabinose transporter permease from Sinorhizobium meliloti 1021

 Score =  101 bits (252), Expect = 2e-26
 Identities = 89/318 (27%), Positives = 151/318 (47%), Gaps = 21/318 (6%)

Query: 7   IQTLLLPMATLAVVLAPIFWINPNTMSYF-----GLGLLLNLAVPMILASMAQLCIIAVN 61
           ++ LLL    L V+ A  F +   T+  F      LGLL ++    ++A     C+ A  
Sbjct: 5   LKKLLLGEQGLLVIFAAAFVVVALTVPNFLTERNMLGLLQSVVTIGVVACTMMFCL-ASR 63

Query: 62  DLDLSIGAFISLVSCIAV--TWLPERPVLGVAALVACV-LLYAAIGALVELFDLPSIVVT 118
           D DLS+G+ ++    +AV  +      VLG+ A +AC  ++  A G ++  F + +++ T
Sbjct: 64  DFDLSVGSTVAFSGMVAVMASNATGSIVLGLLAALACGGIVGLANGIVIARFRINALITT 123

Query: 119 LGLSFVWGGFVWGGWALILLPMPGGAT----PQWIQDVMNLAIPVIPTPIVYAVLIALCA 174
           L    +  GF        L+   G A     P + Q  ++  + V PTPI    L  +  
Sbjct: 124 LATMQIVRGFA-------LIASDGRAVGINDPVFYQLSLSKFLTV-PTPIWVMALFFIVF 175

Query: 175 HWFLMRSSTGVRLRGAGGNPKAIVRSGGSVVRAKALMYGLAGVLGILSALTLVGITTSAD 234
            + L R+  G      GGNP+A   +G  V R +  ++ L G++  ++ + L    TS  
Sbjct: 176 GFLLNRTVFGKNTLAIGGNPEASRLAGVDVARMRIWIFALQGLVCAVAGVLLASRITSGQ 235

Query: 235 ANIAQRYTLISIAAVILGGGSFIGGKVSPIGATLGAITLGIAASFLSFLNIAPKWQIGLQ 294
            N A    L  I+A +LGG S  GG+ +  G  +G + +GIA + ++ LNI   +Q  ++
Sbjct: 236 PNAATGLELSVISACVLGGVSLAGGRATMTGVVVGVLIMGIAENVMNLLNIQAFYQYVVR 295

Query: 295 GAILIIVLSMRILLSARG 312
           G IL+I + +  + S  G
Sbjct: 296 GLILLIAVLLDNMRSVAG 313