Pairwise Alignments

Query, 391 a.a., Integrase from Enterobacter asburiae PDN3

Subject, 411 a.a., tyrosine-type recombinase/integrase from Pseudomonas fluorescens SBW25

 Score =  312 bits (799), Expect = 1e-89
 Identities = 161/386 (41%), Positives = 228/386 (59%), Gaps = 2/386 (0%)

Query: 2   PLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFA-GKPKMISLGVYPTIT 60
           PL D  +   +PE   Y   DG GL   ++PNG KSW  RY+   GK   + LG YP I+
Sbjct: 10  PLADTTLAGLEPENATYREQDGNGLYFRVKPNGQKSWELRYKKPDGKWSWLGLGGYPDIS 69

Query: 61  LADARSRREDARKLVAEGKNPSEVRKEQKIALQTESENAFEKIATEWHQMKSTKWSAGYA 120
            + AR +    R+  + GKNP   ++ +K+A Q  + N FE +  EW + + T W AG +
Sbjct: 70  GSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTSWEAGTS 129

Query: 121 SDIMEAFQNDIFPYVGERPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA 180
             ++ A +  +FP  G+R   EI PLE +  LR +E++G +E+M +VR  C E++  A  
Sbjct: 130 RRVLGALELHVFPVFGKRVYTEILPLEWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARV 189

Query: 181 TGRAEFNPAADLSSALEVHQSNHYPFLKADEITDFLRALDSYTGSRLVQIATKLLMITGV 240
           TGRA  NP   LS  L+   + +Y  +  +E+   LRA++SY  ++ V+I  +LL +   
Sbjct: 190 TGRAVHNPLEGLSKFLQSRSAENYAHVSIEELPALLRAINSYPHAKDVRIGLRLLSLLAS 249

Query: 241 RTIELRAALWSEFDLDNALWEIPAERMKMRRAHLVPLSTQALDLLNELKIMTGNYRYVFP 300
           R  E+R A WSE DL   LW IPAERMK RR H+VPLS QA++ L EL+ +TG Y  +FP
Sbjct: 250 RPSEIREARWSEIDLSKKLWTIPAERMKRRREHVVPLSRQAIEALTELRTLTGAYPLLFP 309

Query: 301 GRNDPNKPMSEASINQLIKRIGYGGKLTGHGFRHTLSTILHERGYESIWIEMQLAHVDKN 360
           GR D   P S       ++R+GY G+ TGHGFRH  STIL+E+G++   IE QL+H  K 
Sbjct: 310 GRKDRTIPRSNTVFLMALRRLGYAGRQTGHGFRHIASTILNEQGFDENHIEAQLSHA-KE 368

Query: 361 NIRGTYNHAQYISNRRVMLSWYSDFI 386
            I G YN A Y+  RRVM+ WY+D +
Sbjct: 369 GIAGVYNKAVYLPQRRVMMQWYADHL 394