Pairwise Alignments

Query, 391 a.a., Integrase from Enterobacter asburiae PDN3

Subject, 416 a.a., tyrosine-type recombinase/integrase from Erwinia tracheiphila SCR3

 Score =  315 bits (808), Expect = 1e-90
 Identities = 159/402 (39%), Positives = 257/402 (63%), Gaps = 18/402 (4%)

Query: 1   MPLNDMQIRRAKPEAKAYTLGDGQGLSLLIEPNGSKSWRFRYRFAGKPKMISLGVYPTIT 60
           M L D+++R  KP  K + L DGQG+ LLI PNGSK WR +YRF GK K+++LGVYP ++
Sbjct: 1   MALTDIKVRTTKPSDKPFKLTDGQGMHLLINPNGSKYWRLQYRFGGKQKVLALGVYPMVS 60

Query: 61  LADARSRREDARKLVAEGKNPSEVRKEQKIALQTESENAFEKIATEWHQMKSTKWSAGYA 120
           L +AR +R++A+KLV++G +PSE +K  KI  Q+E+   FE +A +WH     KWS  ++
Sbjct: 61  LGEARRKRDEAKKLVSDGIDPSEKKKADKIE-QSEALT-FEAVARDWHTACKRKWSDSHS 118

Query: 121 SDIMEAFQNDIFPYVGERPIGEIKPLELLNVLRKIEKRGALEKMRKVRQRCSEVFRYAIA 180
             ++++ ++ +F  +G+R I E+   +LL  ++ +E  G LE   +++QR + V RYA+ 
Sbjct: 119 ERVLKSMEDGLFTAIGKRKISELNTRDLLAPIKAVEASGRLEVASRLQQRTTAVMRYAVQ 178

Query: 181 TGRAEFNPAADLSSALEVHQSNHYPFLKADEITDFLRALDSYTGSRLVQIATKLLMITGV 240
            G  ++NPA +++ A+ V +  H P L  +  ++ L  +DS+ G +L ++A KL ++  +
Sbjct: 179 NGLIDYNPAQEMAGAIAVAKRVHRPALPFERFSELLERIDSFKGRKLTKLAVKLTLLIFI 238

Query: 241 RTIELRAALWSEFDLDNALWEIPAER------------MKMRRAHLVPLSTQALDLLNEL 288
           R+ ELR A WSE D DNA+W IPAER             KMR  HLVPLS QAL +L E+
Sbjct: 239 RSSELRFARWSEIDFDNAMWTIPAEREPLPGVKHSHRGSKMRTPHLVPLSCQALAVLTEI 298

Query: 289 KIMTGNYRYVFPGRNDPNKPMSEASINQLIKRIGYGG--KLTGHGFRHTLSTILHERG-Y 345
           K ++G++  VF G +D  KPMSE ++N+ ++ +GY    ++ GHGFR    + L E G +
Sbjct: 299 KEISGDHELVFIGDHDFRKPMSENTVNKALRSMGYDTTVEVCGHGFRAMACSALIESGLW 358

Query: 346 ESIWIEMQLAHVDKNNIRGTYNH-AQYISNRRVMLSWYSDFI 386
               +E Q++H ++N++R  Y H A+++  R++ML W++D++
Sbjct: 359 SKDAVERQMSHQERNSVRAAYIHKAEHLDERKLMLQWWADYL 400