Pairwise Alignments

Query, 291 a.a., 23S rRNA pseudouridine(2605) synthase RluB from Escherichia coli ECOR38

Subject, 249 a.a., pseudouridine synthase from Synechocystis sp000284455 PCC 6803

 Score =  133 bits (335), Expect = 3e-36
 Identities = 96/251 (38%), Positives = 129/251 (51%), Gaps = 8/251 (3%)

Query: 1   MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60
           M+E++QK+L++ G  SRR  E +I AGRVSV+GK+A LGD+ +      + +DG  I   
Sbjct: 1   MAERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDF-LSVDGKQIKAD 59

Query: 61  ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118
                I   L   KP   L T +DP GR TV D LP+   RG     VGRLD N+ G LL
Sbjct: 60  NRPRDI--YLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALL 117

Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178
            T DGEL  RL HP   + + Y V + G   D  L     G+ L+       T++     
Sbjct: 118 LTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTLPATLEVISEN 177

Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL---PKGLPRGGWTELDLA 235
                  VTLTEGRNR++RRL E +G+ V +L R   G + L    K L  G +  L  A
Sbjct: 178 KDQIHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPA 237

Query: 236 QTNYLRELVEL 246
           +   L++ V L
Sbjct: 238 EIRLLKKQVNL 248