Pairwise Alignments

Query, 326 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Escherichia coli ECOR38

Subject, 324 a.a., ribosomal large subunit pseudouridine synthase D from Vibrio cholerae E7946 ATCC 55056

 Score =  459 bits (1181), Expect = e-134
 Identities = 218/322 (67%), Positives = 267/322 (82%)

Query: 1   MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQRVLVNGKVCDKPKEKVL 60
           MA +++LT TV ++QLGQRLDQA+AE+F D+SRSR+KEW+L+ ++ VNG V  KP+ KV+
Sbjct: 1   MAHQIELTQTVKDSQLGQRLDQAVAELFTDFSRSRLKEWLLEGKIAVNGDVITKPRTKVM 60

Query: 61  GGEQVAINAEIEEEARFEPQDIPLDIVYEDDDIIVINKPRDLVVHPGAGNPDGTVLNALL 120
           GGE + + AE+E+E R+E QD+PL+IVYEDDDIIVINKPRD VVHPGAG  D TVLNALL
Sbjct: 61  GGEVITVQAELEDEQRWEAQDLPLNIVYEDDDIIVINKPRDFVVHPGAGQADKTVLNALL 120

Query: 121 HYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMT 180
            +Y PIA+VPRAGIVHRLDKDTTGLMVVAKTVPAQTRLV +LQ+R++TREYEA+ IG MT
Sbjct: 121 FHYSPIAEVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVRALQKRDVTREYEAIVIGTMT 180

Query: 181 AGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHM 240
           AGG +D+PI RH TKRT M+V PMGK AVTHYR+ EHFR HTRLRLRLETGRTHQIRVHM
Sbjct: 181 AGGMIDKPIGRHSTKRTLMSVSPMGKHAVTHYRVAEHFREHTRLRLRLETGRTHQIRVHM 240

Query: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300
           A++ HPL+GD  YGGR R PKGA+E     +R FDRQALHA ML+  HP++G E+E+HAP
Sbjct: 241 AYLQHPLLGDTAYGGRARIPKGATEELTEMIRDFDRQALHAVMLKFEHPVTGEELEFHAP 300

Query: 301 IPQDMVELIEVMRADFEEHKDE 322
           +P DMVE+   +R D + ++ E
Sbjct: 301 VPDDMVEMTLALREDAKLNRTE 322