Pairwise Alignments

Query, 499 a.a., D-xylose ABC transporter ATP-binding protein from Escherichia coli ECOR38

Subject, 501 a.a., ribose ABC transporter ATP-binding protein RbsA from Erwinia amylovora T8

 Score =  402 bits (1032), Expect = e-116
 Identities = 221/495 (44%), Positives = 316/495 (63%), Gaps = 7/495 (1%)

Query: 5   ILDVSHIAKTFGHVQALKNITLSLRKGRVHTLLGENGAGKSTLMKILAGVYPPTQGTITL 64
           +L +  I K+F  V+AL    LS+  GRV  L+GENGAGKST+MK+L G+YP   G+   
Sbjct: 4   LLQLKGIDKSFPGVKALSGAALSVYPGRVMALVGENGAGKSTMMKVLTGIYPRDAGSFVW 63

Query: 65  RGETITINNPQHSRQLGIAIIFQELSLSNNMTVAENIYANNEP-RRFGIINDKKMLADCQ 123
            G+  T N P+ S++ GI II QEL+L  +++VAENI+ + EP  RFG I  KKM A   
Sbjct: 64  LGQETTFNGPKASQEAGIGIIHQELNLIPSLSVAENIFLSREPVTRFGRIQWKKMYAAAD 123

Query: 124 NLLAELGIPLDPLEMVGNMSMAHRQLVEIAKALSYAADVVIMDEPTSSLSDNEAEILFNI 183
            LL  L +      +VG +S+  RQ+VEIAK LSY + V++MDEPT +L+D E   LF +
Sbjct: 124 ALLQRLNLRFRSHRLVGELSIGDRQMVEIAKVLSYESKVIVMDEPTDALTDTETASLFRV 183

Query: 184 IEKLKQRGCAVIYISHRMDEIMRISDDISVIRDGEYIATHEKKNSDIQHLIAQMVGREMK 243
           I +LK RGC ++YISHRM EI  I DD+++ RDG++IA ++    +   LI  MVGR ++
Sbjct: 184 IGELKARGCGIVYISHRMKEIFEICDDVTIFRDGQFIAEYKVTALNEDSLIEMMVGRRLE 243

Query: 244 NIWPARLGEKPDENVPAKLEVKNLSHPSLFKEVSFAVRPGEVLGFFGLVGAGRSDVMKAL 303
             +P RL + P E    +L+V+NLS P + + VSF++R GE+LG  GL+GAGRS++MK L
Sbjct: 244 EQYP-RLNKAPGE---VRLKVENLSGPGV-ENVSFSLRKGEILGVAGLMGAGRSELMKVL 298

Query: 304 FG-LVSYHGTVLIDGKEVRIANPKQAIDHGIAFVTENRKEEGLVLMHDVNMNTHHVAFQY 362
           +G L    G V ++GK V   +P++ + +GI +++E+RK +GLVL   V  N    A   
Sbjct: 299 YGALPRSKGRVTLEGKAVVARSPQEGLANGIVYISEDRKHDGLVLGMSVKENMSLTALND 358

Query: 363 NASRIGLINHRQEEAKTLQSIARMNTKVSSVHQAVGALSGGNQQKIVLSKWLEKTPRILL 422
            +   G + H QE+      I     K  S+ QA+G LSGGNQQK+ +++ L   P++L+
Sbjct: 359 FSYGAGRLKHAQEQQAVGDFITLFKVKTPSMDQAIGLLSGGNQQKVAIARGLMTRPKVLI 418

Query: 423 LDEPTRGVDVGAKFEIYNVIRQLAAAGTAIILVSSELPEVMALSDRLVVMRNKTIADIYS 482
           LDEPTRGVDVGAK EIY +I Q    G +IILVSS++PEV+ +SDR++VM    ++  + 
Sbjct: 419 LDEPTRGVDVGAKKEIYQLINQFKQEGLSIILVSSDMPEVLGMSDRVLVMHEGRLSGDFP 478

Query: 483 CENLTQTQVMTAATG 497
            E  +Q  +M AA G
Sbjct: 479 IEQASQEILMAAAVG 493



 Score = 98.2 bits (243), Expect = 6e-25
 Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 11/229 (4%)

Query: 21  LKNITLSLRKGRVHTLLGENGAGKSTLMKILAGVYPPTQGTITLRGETITINNPQHSRQL 80
           ++N++ SLRKG +  + G  GAG+S LMK+L G  P ++G +TL G+ +   +PQ     
Sbjct: 268 VENVSFSLRKGEILGVAGLMGAGRSELMKVLYGALPRSKGRVTLEGKAVVARSPQEGLAN 327

Query: 81  GIAIIFQE---------LSLSNNMTVAENIYANNEPRRFGIINDKKMLADCQNLLAELGI 131
           GI  I ++         +S+  NM++      +    R     +++ + D   L      
Sbjct: 328 GIVYISEDRKHDGLVLGMSVKENMSLTALNDFSYGAGRLKHAQEQQAVGDFITLFKVKTP 387

Query: 132 PLDPLEMVGNMSMAHRQLVEIAKALSYAADVVIMDEPTSSLSDNEAEILFNIIEKLKQRG 191
            +D  + +G +S  ++Q V IA+ L     V+I+DEPT  +     + ++ +I + KQ G
Sbjct: 388 SMD--QAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKQEG 445

Query: 192 CAVIYISHRMDEIMRISDDISVIRDGEYIATHEKKNSDIQHLIAQMVGR 240
            ++I +S  M E++ +SD + V+ +G        + +  + L+A  VG+
Sbjct: 446 LSIILVSSDMPEVLGMSDRVLVMHEGRLSGDFPIEQASQEILMAAAVGK 494