Pairwise Alignments

Query, 328 a.a., LacI family transcriptional regulator from Escherichia coli ECOR38

Subject, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC99

 Score =  102 bits (255), Expect = 1e-26
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 7/300 (2%)

Query: 16  LGAALISAPLQAAEKVVVNISKVDGMPWFNRMGEGVVEAGKAFGVNASQVGPSSTDAPQQ 75
           LG A IS  +QAAE++   I K+ G+ +F   G G  +AGK  GV+ +  GP+      Q
Sbjct: 15  LGIAAISMNVQAAERIAF-IPKLVGVGFFTSGGNGAQQAGKELGVDVTYDGPTEPSVSGQ 73

Query: 76  VKIIEDLIARKVNAITIVPNDANVLEPVFKKARDAGIVVLTNESPGQPSA-NWDIEIIDN 134
           V++I + + +  NAI +     + L P  K+A   G+ VLT +S  +P   ++ I     
Sbjct: 74  VQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTP 133

Query: 135 EKFAAEYVEHMAKRMG-GKGGYVIYVGSLTVPQHNLWA-DLLVKYQKEHYPDMHEVTRRM 192
            +     V+  A+++   K     +  S TV   N W  +   K  KEH P    VT + 
Sbjct: 134 AQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEH-PGWEIVTTQF 192

Query: 193 PVAESVDDSRRTTLDLMKTYPDLKAVVSFGSNGPIGAGRAVKEKRAKNKVAVYGMMIPSQ 252
              ++   S +T   ++K Y DL A+++  +N    A +A  E    +KVA+ G   P+ 
Sbjct: 193 GYNDAT-KSLQTAEGILKAYSDLDAIIAPDANALPAAAQAA-ENLKNDKVAIVGFSTPNV 250

Query: 253 AASLIKSGDITEGITYDPASAGYALAAVASTLLKGEEIKPGLEMDNLGKADVDMDKRIIR 312
               ++ G + E   +D    G     VA  LLK   +K G ++D  G   V++    ++
Sbjct: 251 MRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGDKLDIQGVGQVEVSPNSVQ 310