Pairwise Alignments

Query, 344 a.a., AI-2 transporter TqsA from Escherichia coli ECOR38

Subject, 368 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  302 bits (773), Expect = 1e-86
 Identities = 153/325 (47%), Positives = 222/325 (68%)

Query: 16  MLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMA 75
           ++  +VIIL GI+ A+ I+VPF+L+ FIAVI NP +  M ++RVP+ LAV +LM  IV+ 
Sbjct: 16  VMAFVVIILAGIKAASPIVVPFVLSCFIAVICNPAIGLMTKYRVPKWLAVILLMCFIVLM 75

Query: 76  MVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMT 135
            + L + +GS++NE ++ LPQYRN ++     +   LQ + I +S +Q+  Y DP  A++
Sbjct: 76  GLWLASLVGSSINEFSKQLPQYRNQLVEQFSWVLHKLQALNIQISKEQVLAYFDPGMALS 135

Query: 136 LLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSH 195
           + TN+L+ + N M+++FL++LT++FML E   LP K    +  P   +  I R + SV+ 
Sbjct: 136 MTTNMLSGVGNVMANLFLIILTIVFMLFEASSLPKKLHLALDDPDMRLQQIDRFLQSVNQ 195

Query: 196 YLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVF 255
           Y+V+KT +S+ TGL+    LA + V +A +W ++AF  NYIPNIGS++AAIP +    + 
Sbjct: 196 YMVIKTLVSLATGLIVGVGLAFIGVDYALLWAVIAFLFNYIPNIGSIIAAIPAVLLAFIQ 255

Query: 256 NGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSV 315
            G   A      Y+  N+V GN++EP+ MGRGLGLSTLVVFLSLIFWGWLLG VGMLLSV
Sbjct: 256 LGPAAAGGTTMLYIGANMVMGNVVEPKFMGRGLGLSTLVVFLSLIFWGWLLGSVGMLLSV 315

Query: 316 PLTIIVKIALEQTAGGQSIAVLLSD 340
           PLT++VKIALE +  G  +A+LLSD
Sbjct: 316 PLTMVVKIALESSKSGSWLAILLSD 340