Pairwise Alignments

Query, 631 a.a., hypothetical protein from Cupriavidus basilensis FW507-4G11

Subject, 587 a.a., sigma-54-dependent Fis family transcriptional regulator from Vibrio cholerae E7946 ATCC 55056

 Score =  259 bits (662), Expect = 2e-73
 Identities = 198/633 (31%), Positives = 307/633 (48%), Gaps = 65/633 (10%)

Query: 3   LFRSWTRSLNTFQLDPGNTSGPRVISAAELKDRRNRAEALL----RFSSPVVERLHGIVG 58
           L  SW RS              R +S  +LK+RR     L+    RF+ P+  +L     
Sbjct: 13  LVNSWQRSEQAGLTQQSRAQDIR-LSDNKLKERRQELAGLIDTVSRFALPLFYQLFA--- 68

Query: 59  KAGYCVLVADADGALIDFRGQEDRRKEYRQHGLYHGRYFTEDAEGTSGVACVLADKEPIT 118
            +   +++ D  G +I   GQ   R++  Q  L  G  + E  +GT+ +   L +++PI+
Sbjct: 69  HSDSRLILTDQHGVIIGSWGQARFREKLSQIALSSGACWQEPIKGTNAIGTALIEQKPIS 128

Query: 119 VHTEDHFRAAFTCLTCTAAPIISPAGELTGVLDVSAVRNSENRDSQELIYAWVCQAAEMI 178
           V  E HF      ++C+A+PI    G+L GVLD+++ +      +Q ++   V    +++
Sbjct: 129 VIGEQHFIQHHHFISCSASPIFDYTGQLIGVLDITSEQQKHTLSTQVVVQNMV----QLV 184

Query: 179 ENAYLLH-DTGHLWTLYLHRSQDYLSLHPELLIAFDDAGNIASMNRQTRSMLSRLYTAIP 237
           EN  L     GH+  + L      LS   + +I  D++G I + N+    +L++      
Sbjct: 185 ENQLLNQIPHGHV-RIDLACEPSLLSSGWQGVIIADESGQILAHNQVAGQLLAQ------ 237

Query: 238 SNVQHLFDLNAGQVIDLNSGLEMFPLRLTRGGDRFFARLRPPRQALRTISLPPGHPAAGH 297
                      G+VI   S  ++ P              RP   A    +  P H     
Sbjct: 238 -----------GRVIG-QSVEQVLP--------------RPQTHASFIYTTTPLHSKQHR 271

Query: 298 AEPAARAIASDRLVTGDPQVSSHLARALQIIDRRIPVLLQGETGTGKEAFALAVHRGSLR 357
               A   ASD L  GD +V     +A ++ID+ I +L+ G+TG GK  F  A+H+ S R
Sbjct: 272 TR--ALTPASD-LHFGDAEVERCWQQANRVIDKDIRLLILGQTGVGKNEFVKALHKNSQR 328

Query: 358 APQPFVAVNCAAIPDTLIESELFGYAEGAFTGAKRKGLKGKILQAHGGTLFLDEIGDMAL 417
              P VAVNC A+   L+E+ELFGY  GAFTGA  KG +GK+  A  G LFLDEI D+ L
Sbjct: 329 KNGPLVAVNCGALAKELVEAELFGYVAGAFTGASHKGYQGKVRLADKGILFLDEIADLPL 388

Query: 418 PLQTRLLRVLAENELVPLGSEQSVRVDINLICATHRDLARMVSEGTFREDLYYRLTGAVF 477
             Q+RLL VL +  ++P+GS  + +VDI +I ATH++L ++V++G FR+DLYYRL+  V 
Sbjct: 389 DAQSRLLHVLQDKTVLPVGSNHATKVDIQIIAATHKNLEQLVTQGLFRQDLYYRLSDLVV 448

Query: 478 RLPPLRDRTDLGELVDFFLADEAQAHGTRSALSEEAMACIRRYRWPGNVRQLRMALRYAC 537
            LP  + R D   L+       + A      +  + M  +  Y WPGN+R+L   ++ A 
Sbjct: 449 ELPSFQQRQDRQALIHHIHRRYSDA---GQQICGDLMQRLLAYHWPGNLRELDSLIKVAS 505

Query: 538 ALAAAQGVIVAEDLPDYL-RCPADAAPAAPQPANPPVTAQAFDSAGLRPGELLEREHIAQ 596
            +A  +GV+    LP +L +  + AAP A +        Q  D        LL+     Q
Sbjct: 506 LMAEGEGVLTFNHLPTHLAQKLSHAAPTATE------DDQQKDIKSTVEASLLKTYQATQ 559

Query: 597 MLACHHWRVKETAKALGMSRATIYRKMARYGIV 629
                   + +T++ LG+SR TIYRK+   GI+
Sbjct: 560 ------GNISQTSRLLGLSRNTIYRKLKALGIL 586