Pairwise Alignments

Query, 298 a.a., chemotaxis motB protein from Caulobacter crescentus NA1000

Subject, 344 a.a., membrane protein from Magnetospirillum magneticum AMB-1

 Score =  232 bits (592), Expect = 8e-66
 Identities = 139/322 (43%), Positives = 192/322 (59%), Gaps = 35/322 (10%)

Query: 7   QPIIIKKVKKGGGHGHHGGAWKVAYADFVTAMMAFFLLMWLLNTTSPEQKQGIADYFAPA 66
           Q IIIK+VKK  G G HGGAWKVAYADFVTAMMAFFLL+WLLN  + EQ  G+++YFAP 
Sbjct: 6   QQIIIKRVKKVAG-GAHGGAWKVAYADFVTAMMAFFLLLWLLNAVTEEQLTGVSNYFAPT 64

Query: 67  SISSTTSGSGGILGGTSLGDDGAKAD--GKLSVVQQMAPEA-----QDVTKEAQSSETAN 119
             S ++SG+GG+LGG  +G +GA+       S+VQ + P +     +D+T   + +    
Sbjct: 65  MASKSSSGAGGLLGGKVIG-EGAQVSNTSSPSLVQHLPPASIGPGGEDLTGSKEFAPENE 123

Query: 120 LDSA------------------------SEQALRDALAKKEQDSFASAAQSLRQSLQDMP 155
            DS+                        SEQ  ++A A++EQ  F  A + L  +++ +P
Sbjct: 124 GDSSLGPGKGAGQGEGQGAGQGKDRSGMSEQEFKEAQAQREQQKFDKAKEVLEGAMKGIP 183

Query: 156 ELAELSKQILIDQTPEGLRIQLVDQEGRSMFKENSREPNDRARVLLRAVAKVINQLP-NR 214
           E+ +    +L+D TPEGLRIQ+ DQEG +MF   S  P    R +L  V++V+ QLP NR
Sbjct: 184 EMKQFQGSMLVDNTPEGLRIQITDQEGLAMFPSGSSAPYGHTRAMLDLVSRVVRQLPDNR 243

Query: 215 VTISGHTSANAFGKKQD-GDWALSAQRADASRQVLRSAGVDDDRVYQVSGKANSEPLYAD 273
           + ISGHT A  F       +W LSA RA A+R+ L ++GV + R+ ++ G+A+ EPL   
Sbjct: 244 IAISGHTDAIPFRDPSGYTNWELSADRALATRRALIASGVPEGRIDRIVGRADQEPLDKA 303

Query: 274 DPTLAGNRRISIVLLREKPVLP 295
           DP    NRRISI+LLRE  V P
Sbjct: 304 DPKGLRNRRISIILLRENDVGP 325