Pairwise Alignments

Query, 583 a.a., type IV secretory pathway protein VirD4 from Burkholderia phytofirmans PsJN

Subject, 620 a.a., conjugal transfer protein TraG from Escherichia coli ECOR38

 Score =  208 bits (530), Expect = 5e-58
 Identities = 154/457 (33%), Positives = 234/457 (51%), Gaps = 23/457 (5%)

Query: 12  IVVGIWRGRYLRFTGQQFVLLAAPARSGKGVSIVIPNLLSYPDSVVVLDIKRENYAITAG 71
           I+VGI   + +R+ G  F  + A  R+GKG  IVI NL+ Y  SV++LD KRE + IT+ 
Sbjct: 131 IIVGIKDKKIIRYVGAAFSAMGAGTRAGKGAGIVITNLMKYWWSVIILDPKRECFNITSL 190

Query: 72  FR-LAHGQEVYLFDPFAEDGRTHRFNPLSSISDGL---FRVGDILAIGYALYPPNGHD-- 125
            R +  G EVY FDPF+    THRFNPL  +S G    F   + L++    Y  +G D  
Sbjct: 191 IRKVILGHEVYKFDPFSPV--THRFNPLYYVSMGTSEGFNQLENLSLIIYPYKTDGADAG 248

Query: 126 DFWKDQARNLFLGIVLLLSEWRDARRTGRGESIPDY-PV-TMGEVL----RQSSGHGMPV 179
            +    A  +F    + L  W   +    G    D  PV +M ++     R    H +  
Sbjct: 249 SYLNKTAGGVFKSYAVAL--WFMIKNDKAGLKTLDIEPVFSMSKINQLFERAEPEHLLSF 306

Query: 180 KAYLQRALVQHRALLSGACVDALNRFLSNDDKVLASILATFHAPLTIWANPIVDAATSAN 239
              ++  L      L+   V  L  F+  +DK  A + + F   L+ +ANP V  AT  N
Sbjct: 307 MNDIRSELRGKDKTLADIGVAGLKAFIEMEDKTKAQLKSNFLNGLSPFANPNVANATDGN 366

Query: 240 DFDLRDVRRRRMSVYIGITPDHLSEAALLVNLVFSQLVNLNTKQLPEADPTLRFQCLLLL 299
           DFDLR VR++RM++Y  I+ D+   A  + N+ F   + +N +++P  DP ++  CL LL
Sbjct: 367 DFDLRQVRKKRMTIYFCISGDNARLAEKITNIFFQLGIQVNLEKMPTDDPEIKHDCLFLL 426

Query: 300 DEMTAIGKIHIIARAVAYMAGYNLRLLSVVQSIAQLESVYGRSDARTFLTNHAMQILYAP 359
           DE  +IG +  I      +AGY L+LL V Q  +QLE +Y  + ++T L +   +I+Y+ 
Sbjct: 427 DEFPSIGAVDYIKSKSGLIAGYKLKLLIVYQVGSQLEEIYSYAGSKTLLASAPCKIVYSA 486

Query: 360 REQKDANDYSEMLGTFTDQSRSVSRPNTMFGGRGGSSESMSEQ--RRPLLLPQELKELGR 417
            + KDA + SE +GT T    S S+  +    RGG+S S SE    RPL+   EL  L  
Sbjct: 487 SDVKDARELSEAMGTRTVTIGSKSKSRS----RGGTSRSESENLIERPLVTTNELLTLKF 542

Query: 418 DKEIIVLENTKPILADRICYW-RDPVFASRVSIAPSV 453
            +EI+ ++   PI  ++  Y+  +  F   V +AP +
Sbjct: 543 SEEILAMKGENPIRCEKAFYYLHEYFFGDFVKVAPEL 579