Pairwise Alignments

Query, 370 a.a., Sensor kinase CckA from Azospirillum sp. SherDot2

Subject, 638 a.a., Two-component hybrid sensor and regulator from Pseudomonas fluorescens GW456-L13

 Score =  233 bits (595), Expect = 8e-66
 Identities = 134/314 (42%), Positives = 184/314 (58%), Gaps = 6/314 (1%)

Query: 56  GAQLTHSLLAFARRQMLTPKPAHMLPLIAGMRPLLERTLGGLIRFDIDVPPGTAPVMVDP 115
           G  LT  +LAFARRQ L   P  +  L+ G+  LL  +LG  ++ +   P    PVM D 
Sbjct: 330 GVSLTQRMLAFARRQELKSVPVRIPALVEGISGLLRSSLGPSVKVETRFPEDLEPVMADI 389

Query: 116 AQLESAILNLAINARDAMPQGGVLTLRADNIAIRRQGEPGCPAELAPGDYVAISLTDTGI 175
            QLE A+LNLA NARDAMP GG +   A     R +   G  + LA G YV +++ DTG 
Sbjct: 390 NQLELAVLNLATNARDAMPHGGTIIFSA-----RTEEVTGGASSLAAGRYVCLNIADTGE 444

Query: 176 GMEEATLARAFEPFFTTKGVGGGSGPGLSMVYGMVAQSGGGVTIASKVGKGTSVTIFIPR 235
           GM+E TLA A +PFFTTKGVG G+G GLSMV+G + Q GG   + S   +GT+  +++P 
Sbjct: 445 GMDETTLASAMDPFFTTKGVGKGTGLGLSMVHGFIEQLGGRFILKSNKDQGTTAELWLPV 504

Query: 236 ASEARALTQEPPSETIPGDGAVVLLVDDDLLVRAGAAAVLKMLGYQVIAATSGLEALKVL 295
           A+          ++T+      VL+VDDD LV    + +L+ LG++VI+A SG  AL++ 
Sbjct: 505 ATRGSVAEPVAQTQTVEVPRLCVLVVDDDSLVLTSTSLLLEDLGHRVISAPSGARALELF 564

Query: 296 QERMPVDVMITDYAMPGMSGVALIQETRRLAPSLPVLLITGYTDRPEGI-ERCAVLHKPF 354
                +D++ITD AMP MSG  L    R + PS+P++L TG+ +R EGI ER   L KPF
Sbjct: 565 GSEPDIDLVITDMAMPQMSGAQLANAIRLIRPSVPIILATGFAERLEGIAERLPRLSKPF 624

Query: 355 KPQALAEQIATLLR 368
               L E IA  ++
Sbjct: 625 TQLNLVEVIALAMK 638