Pairwise Alignments

Query, 370 a.a., Sensor kinase CckA from Azospirillum sp. SherDot2

Subject, 899 a.a., PAS domain S-box-containing protein from Paraburkholderia bryophila 376MFSha3.1

 Score =  231 bits (588), Expect = 8e-65
 Identities = 148/348 (42%), Positives = 195/348 (56%), Gaps = 14/348 (4%)

Query: 32  AADCASTALAKPRRSVALASRTACGAQLTHSLLAFARRQMLTPKPAHMLPLIAGMRPLLE 91
           AAD      A  RR  A       GA+L   LLAFARRQ L+P   +   L+AGM  +L 
Sbjct: 363 AADAGDNP-ATLRRLSAATDAVKRGAKLAAHLLAFARRQPLSPTVLNPRRLLAGMSEMLH 421

Query: 92  RTLGGLIRFDIDVPPGTAPVMVDPAQLESAILNLAINARDAMPQGGVLTLRADNIAIRRQ 151
           R LG  I     +      V  D  QLE+A+LNLAIN RDAM   G LT+RA N   R  
Sbjct: 422 RALGETITIKTVLSDDLWNVQADRNQLENALLNLAINGRDAMKADGTLTVRAAN---RVL 478

Query: 152 GEPGCP--AELAPGDYVAISLTDTGIGMEEATLARAFEPFFTTKGVGGGSGPGLSMVYGM 209
               C   AEL+PG+YV  S+TDTG GM    L  AFEPFFTTK  G G+G GLSMV+G 
Sbjct: 479 DAAFCNDHAELSPGEYVVFSITDTGAGMRPEVLEHAFEPFFTTKPNGHGTGLGLSMVFGF 538

Query: 210 VAQSGGGVTIASKVGKGTSVTIFIPRASEARALTQEPPSETIPGDGAVVLLVDDDLLVRA 269
           V QSGG   I S+VG+GT+V+++ PR  E         + T  G G  +L+V+DD  VR 
Sbjct: 539 VRQSGGHTLIDSEVGQGTTVSLYFPRCCEPETPETVDQTATPVGGGETILVVEDDADVRL 598

Query: 270 GAAAVLKMLGYQVIAATSGLEALKVLQERMPVDVMITDYAMPG-MSGVALIQETRRLAPS 328
            A  +L  LGY+V+ A+SG  AL+ +Q  MP+D++ TD  MPG +  V L +     +P+
Sbjct: 599 TAVEMLAQLGYKVLTASSGDAALEFIQSDMPIDLLFTDVVMPGKIKSVELARRAAARSPA 658

Query: 329 LPVLLITGYTDRPEGIER------CAVLHKPFKPQALAEQIATLLRVS 370
           +P L  +GYT R E +          +L KP++   LA ++ ++LR S
Sbjct: 659 VPTLFTSGYT-RDEIVHHGKLDAGITLLSKPYRRDDLARKVRSVLRAS 705



 Score = 53.1 bits (126), Expect = 3e-11
 Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 4/115 (3%)

Query: 256 AVVLLVDDDLLVRAGAAAVLKMLGYQVIAATSGLEALKVLQERMPVDVMITDYAMPGMSG 315
           A VLLV+DD   R   +++L  LG    +  S  EAL ++  +   D++ TD  +PGMSG
Sbjct: 779 AHVLLVEDDADSREALSSLLGALGLDCTSVGSAEEALPLVPAQR-YDILCTDITLPGMSG 837

Query: 316 VALIQETRRLAPSLPVLLITGYTDRP---EGIERCAVLHKPFKPQALAEQIATLL 367
             L +   R  P + VLL++GY       + I    +L KP     L  ++A  L
Sbjct: 838 DNLARAVLRAQPDVQVLLVSGYGAHAPIGDSIPGARMLGKPLDLAQLRRELARWL 892