Pairwise Alignments

Query, 293 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

Subject, 296 a.a., RNA polymerase sigma factor RpoH from Azospirillum sp. SherDot2

 Score =  349 bits (895), Expect = e-101
 Identities = 179/291 (61%), Positives = 224/291 (76%), Gaps = 3/291 (1%)

Query: 1   MSTAIALRSPDSGESLSRYINDTHRYPVLTAEDEYMLAKAWTEHGDVDAAHRLVTSHLRL 60
           M+TA  L +  S  +LSRY+ +  ++P+L  + EYMLAK+W +H D  AAH+LVTSHLRL
Sbjct: 1   MATASNLPAIGSESNLSRYLQEIRKFPMLEPQQEYMLAKSWQQHEDSGAAHQLVTSHLRL 60

Query: 61  VVKIAGGYRGYGLPLSDLIAEGNLGLMTAVKKFEPERGFRLSTYAMWWIKASIQDYILRS 120
           V KIA GYRGYGLPLS+LI+EGN+G+M AVK+F+P+RGFRL+TYAMWWI+A+IQ+YIL S
Sbjct: 61  VAKIAMGYRGYGLPLSELISEGNVGMMQAVKRFDPDRGFRLATYAMWWIRAAIQEYILHS 120

Query: 121 WSLVKIGTTAAQKKLFFSLGRLKRKLGEYGSGDLHPDSVTSIATDLSVPEDDVVAMNRRM 180
           WSLVK+GTTAAQKKLFF+L RLK ++     GDL P+ V +IAT L VPE DVV MNRR+
Sbjct: 121 WSLVKMGTTAAQKKLFFNLRRLKGQMQAIEEGDLSPEQVHAIATKLDVPEQDVVNMNRRL 180

Query: 181 SGPVASLNAPMSADGDSGEWQDLLADERPSVEESLVERGEARQRSALLHEAMAVLNDRER 240
           + P  SLNAP+ A+ + GEWQD L DE  S E +L +R E  +R  LL  AM  LNDRER
Sbjct: 181 ASPDHSLNAPLRAESE-GEWQDFLVDETASQEITLADREELGKRRKLLANAMTALNDRER 239

Query: 241 DILTSRRLSDSPLTLEDLSVRYGVSRERIRQIEEKAFEKVARQTRVLAAAV 291
           DILT RRL ++P TLEDLS +YG+SRER+RQIE +AFEK+  Q  + AAAV
Sbjct: 240 DILTERRLREAPTTLEDLSQKYGISRERVRQIEVRAFEKL--QKAIKAAAV 288